hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17195531/chunk_1/iprscan-20080501-17195531.nocrc
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Query sequence: KIAA1098
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00622.18.fs SPRY domain                                     96.9    2.9e-27   1
PF00622.18.ls SPRY domain                                     98.7    1.6e-26   1
PF00643.14.ls B-box zinc finger                               51.9      2e-12   1
PF00643.14.fs B-box zinc finger                               50.1    3.7e-12   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           34.7    8.4e-12   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           36.5    8.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1      32    71 ..     1    50 []    34.7  8.4e-12
PF00097.15.ls   1/1      32    71 ..     1    50 []    36.5  8.3e-08
PF00643.14.ls   1/1     107   148 ..     1    50 []    51.9    2e-12
PF00643.14.fs   1/1     107   148 ..     1    50 []    50.1  3.7e-12
PF00622.18.fs   1/1     364   495 ..     1   154 []    96.9  2.9e-27
PF00622.18.ls   1/1     364   495 ..     1   154 []    98.7  1.6e-26

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 32 to 71: score 34.7, E = 8.4e-12
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++C +++ +++     +l CgH      fCr C++r+++   + tC
    KIAA1098    32    CAVCYDPFRDAV-----TLRCGHN-----FCRGCVSRCWEVQVSPTC 68   

                   plC<-*
                   p+C   
    KIAA1098    69 PVC    71   

PF00097.15.ls: domain 1 of 1, from 32 to 71: score 36.5, E = 8.3e-08
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++C +++ +++     +l CgH      fCr C++r+++   + tC
    KIAA1098    32    CAVCYDPFRDAV-----TLRCGHN-----FCRGCVSRCWEVQVSPTC 68   

                   plC<-*
                   p+C   
    KIAA1098    69 PVC    71   

PF00643.14.ls: domain 1 of 1, from 107 to 148: score 51.9, E = 2e-12
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +  rvC  H+   +lslFC +D +lLC++C+ +++H      +gH+v
    KIAA1098   107    RFSRVCRLHR--GQLSLFCLEDKELLCCSCQADPRH------QGHRV 145  

                   vpl<-*
                   +p+   
    KIAA1098   146 QPV    148  

PF00643.14.fs: domain 1 of 1, from 107 to 148: score 50.1, E = 3.7e-12
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +  rvC  H+   +lslFC +D +lLC++C+ +++H      +gH+v
    KIAA1098   107    RFSRVCRLHR--GQLSLFCLEDKELLCCSCQADPRH------QGHRV 145  

                   vpl<-*
                   +p+   
    KIAA1098   146 QPV    148  

PF00622.18.fs: domain 1 of 1, from 364 to 495: score 96.9, E = 2.9e-27
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      +G h +EV +++ +     wrvG+++             +++  g++
    KIAA1098   364    QGSHAWEVALGGLQS----WRVGVVRVRQ----------DSGAEGHS 396  

                   llGddegswgydgsggkkyhagesg......epyglpfqekgdviGcflD
                   ++++++   g+++   ++++++e+++  ++++++++ + + +++ ++ l 
    KIAA1098   397 HSCYHDTRSGFWYV--CRTQGVEGDhcvtsdPATSPLVLAIPRRLRVELE 444  

                   yeagVtisFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadg
                   +e+g ++sF+ ++++     +h+y+F+ ++f+     +++P+++lg+a+g
    KIAA1098   445 CEEG-ELSFYDAERH-----CHLYTFH-ARFG-----EVRPYFYLGGARG 482  

                   ggeairlnfgqlp<-*
                   +g   +l++++l+   
    KIAA1098   483 AGPPEPLRICPLH    495  

PF00622.18.ls: domain 1 of 1, from 364 to 495: score 98.7, E = 1.6e-26
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      +G h +EV +++ +     wrvG+++             +++  g++
    KIAA1098   364    QGSHAWEVALGGLQS----WRVGVVRVRQ----------DSGAEGHS 396  

                   llGddegswgydgsggkkyhagesg......epyglpfqekgdviGcflD
                   ++++++   g+++   ++++++e+++  ++++++++ + + +++ ++ l 
    KIAA1098   397 HSCYHDTRSGFWYV--CRTQGVEGDhcvtsdPATSPLVLAIPRRLRVELE 444  

                   yeagVtisFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadg
                   +e+g ++sF+ ++++     +h+y+F+ ++f+     +++P+++lg+a+g
    KIAA1098   445 CEEG-ELSFYDAERH-----CHLYTFH-ARFG-----EVRPYFYLGGARG 482  

                   ggeairlnfgqlp<-*
                   +g   +l++++l+   
    KIAA1098   483 AGPPEPLRICPLH    495  

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