# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk07318.fasta.huge -Q ../query/KIAA1098.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1098, 504 aa vs ./tmplib.24314 library 1987001 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.1860+/-0.00628; mu= 21.3346+/- 0.429 mean_var=146.6133+/-35.470, 0's: 0 Z-trim: 12 B-trim: 0 in 0/40 Lambda= 0.105922 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0898 ( 979 res) hk09541 ( 979) 222 46.0 1.4e-05 KIAA1991 ( 712 res) bf00209 ( 712) 178 39.0 0.0013 KIAA0646 ( 486 res) hj03808 ( 486) 169 37.3 0.0029 KIAA1095 ( 1098 res) hk06736 (1098) 165 37.4 0.0063 >>KIAA0898 ( 979 res) hk09541 (979 aa) initn: 117 init1: 93 opt: 222 Z-score: 191.9 bits: 46.0 E(): 1.4e-05 Smith-Waterman score: 231; 24.042% identity (54.704% similar) in 287 aa overlap (6-283:2-271) 10 20 30 40 50 KIAA10 KFRAPEPAARAM-ERSPDVSPGPS-RSFKEELLCAVCYDPFRDA-VTLRCGHNFCRGCVS :::.: .: :.. : .:. : . : .:.. .::: . .:.. : .:. KIAA08 AEPAGRQRPRREPEAMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIR 10 20 30 40 50 60 70 80 90 100 110 KIAA10 RCWEVQVSPTCPVCKDRASPADLR--TNHTLNNLVEKLLREEAEGARWTSYRFSRV--CR : : .. :: :. .: .:: .: . : . : . . :... .. :. KIAA08 R-WLTEQRAQCPHCR---APLQLRELVNCRWAEEVTQQL-DTLQLCSLTKHEENEKDKCE 60 70 80 90 100 110 120 130 140 150 160 170 KIAA10 LHRGQLSLFCLEDKELLCCSCQA-DPRHQGHRVQPVKDTAHDFRAKCRNMEHALREKAKA :. .::.:: :. .: .: : :: .:. . .. .: . :: KIAA08 NHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLR----- 120 130 140 150 160 180 190 200 210 220 230 KIAA10 FWAMRRSYEAIAKHNQVEAAWLEGRIRQEFD-KLREFLRVEEQAILDAMAEETRQKQLLA :: .: :. ..:: .:. .:. : ..:: .: . .. . . ..: . KIAA08 ----RRLMELISLVQEVERN-VEA-VRNAKDERVRE-IRNAVEMMIARLDTQLKNKLITL 170 180 190 200 210 240 250 260 270 280 290 KIAA10 DEKMKQLTEETEVLAHEIERLQMEMKEDDVSFLMKHKSRKRRLFCTMEPEPVQPGMLIDV . .::.:::.: ..... ... . : :....:. .: .. .:. KIAA08 MGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPV 220 230 240 250 260 270 300 310 320 330 340 350 KIAA10 CKYLGSLQYRVWKKMLASVESVPFSFDPNTAAGWLSVSDDLTSVTNHGYRVQVENPERFS KIAA08 PPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYY 280 290 300 310 320 330 >>KIAA1991 ( 712 res) bf00209 (712 aa) initn: 162 init1: 134 opt: 178 Z-score: 156.7 bits: 39.0 E(): 0.0013 Smith-Waterman score: 178; 38.158% identity (59.211% similar) in 76 aa overlap (1-74:39-113) 10 20 KIAA10 KFRAPEPAA--RAMERSPDVSPGPSRSFKE : :: ::. . :: . : : KIAA19 GPSTRASSAAAAAALSRRGRRGRCDETAAAKTGAPGPASGPSLLVLSPPLLQPPLPPRPE 10 20 30 40 50 60 30 40 50 60 70 80 KIAA10 ELLCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVCKDRASPADLRTNHTLNN : :: : .: .:..: :::..::::..: .. ..: :: :. : KIAA19 ESGCAGCLEPPGEAAALPCGHSLCRGCAQRAADA-AGPGCPRCRARGPGWARRRARDDGQ 70 80 90 100 110 120 90 100 110 120 130 140 KIAA10 LVEKLLREEAEGARWTSYRFSRVCRLHRGQLSLFCLEDKELLCCSCQADPRHQGHRVQPV KIAA19 ADSEVLGECARRSQPERCRPRRDGGAAAAGPRPEQEPRAAPAEPDFIFRAPIKLSKPGEL 130 140 150 160 170 180 >>KIAA0646 ( 486 res) hj03808 (486 aa) initn: 119 init1: 119 opt: 169 Z-score: 150.6 bits: 37.3 E(): 0.0029 Smith-Waterman score: 169; 32.967% identity (64.835% similar) in 91 aa overlap (26-114:398-485) 10 20 30 40 50 KIAA10 KFRAPEPAARAMERSPDVSPGPSRSFKEELLCAVCYDPFRDAVTLRCGHNFCRGC ...:: : .: . : .:::: :.:.:: : KIAA06 AKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYC 370 380 390 400 410 420 60 70 80 90 100 110 KIAA10 VSRCWEVQVSPTCPVC-KD-RASPADLRTNHTLNNLVEKLLREEAEGARWTSYRFSRVCR ... : .. . ::.: :: ... .: .. .:..:..: : : : . : .. : KIAA06 INE-W-MKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKE-RRIVLIRERKAKR 430 440 450 460 470 480 120 130 140 150 160 170 KIAA10 LHRGQLSLFCLEDKELLCCSCQADPRHQGHRVQPVKDTAHDFRAKCRNMEHALREKAKAF : KIAA06 LF >>KIAA1095 ( 1098 res) hk06736 (1098 aa) initn: 144 init1: 117 opt: 165 Z-score: 144.4 bits: 37.4 E(): 0.0063 Smith-Waterman score: 178; 24.895% identity (51.477% similar) in 237 aa overlap (29-262:47-263) 10 20 30 40 50 KIAA10 KFRAPEPAARAMERSPDVSPGPSRSFKEELLCAVCYDPFRDAVTLRCGHNFCRGCVSR .: ::.:. ..: .: ::: :: ::: KIAA10 RGRPAARRRPRGLAATMGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLP 20 30 40 50 60 70 60 70 80 90 100 110 KIAA10 CWEVQVSPTCPV-CKDRASPADLRTNHTLNNLVEKLLREEAEGARWTSYRFSRVCRLHRG : :: .::. :. : : .: ::.: : . .:. . . : ... .:: .:.. KIAA10 -WVVQ-EGSCPARCRGRLSAKEL--NHVLP-LKRLILKLDIKCA-YATRGCGRVVKLQQ- 80 90 100 110 120 120 130 140 150 160 170 KIAA10 QLSLFCLEDKELLCCSCQADPRHQG-HRVQPVKDTAHDFRAKCRNMEHALREKAKAFWAM : .. : : :: : .: .:. .: : . . . : . . KIAA10 ------LPEHLERCDFAPARCRHAGCGQVLLRRDVEAHMRDAC-DARPVGRCQEGCGLPL 130 140 150 160 170 180 180 190 200 210 220 230 KIAA10 RRSYEAIAKHNQVEAAWLE-GRIRQEFDKLREFLRVEEQAILDAMAEETRQKQLLADEKM .. . . : ..: . : .. .. :.. :. : :. :.:.:.:. KIAA10 THGEQRAGGHCCARALRAHNGALQARLGALHKALKKE------ALRAGKREKSLVAQLAA 190 200 210 220 230 240 250 260 270 280 290 KIAA10 KQLTEETEVLAHEIERLQMEMKEDDVSFLMKHKSRKRRLFCTMEPEPVQPGMLIDVCKYL :: . .: .. . .. . :..: KIAA10 AQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGGKGEETKSLTLVLHRDSGSLGFNII 240 250 260 270 280 290 504 residues in 1 query sequences 1987001 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:09:04 2008 done: Thu Dec 18 15:09:05 2008 Total Scan time: 0.440 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]