hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17130761/chunk_1/iprscan-20080501-17130761.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1094 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01148.10.ls Cytidylyltransferase family -36.9 0.00041 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01148.10.ls 1/1 341 543 .. 1 343 [] -36.9 0.00041 Alignments of top-scoring domains: PF01148.10.ls: domain 1 of 1, from 341 to 543: score -36.9, E = 0.00041 *->kqRiitaivliliflillflggfaaliflllvaavvilalyElirll ++R+ ++++++++ ++ ++++ + l+ ++++ ++++++ E+ r + KIAA1094 341 IARKYFHLIVVATYIPGIIFDRP--LLYVAATVCLAVFIFLEYVRYF 385 rlkfrsrrlllt....LmRerekerglgliflllalllvylehllalfgl r+k + l+ + + L + + +l +i+lll++ l + KIAA1094 386 RIKPLGHTLRSFlslfLDERDSGPLILTHIYLLLGMSLPIW--------- 426 vlllilvlllLvltvlsklvgsasgwlssgtladvsltllplfyvglfll l+ ++ + +g+l KIAA1094 427 ---------------LIPRPCTQKGSL----------------------- 438 sLvKkrykyQFsqfawtHltLllvvtqslllitnplfGllwilll...il G +l++ ++l KIAA1094 439 -------------------------------------GGARALVPyagVL 451 vvwaaDigAYfvGkafGkhKlaPkiSPnKTvEGfiGGfvaavlvgllfsl v ++D+ A ++G +G ++P +KT EG + ++a ++ l+ l KIAA1094 452 AVGVGDTVASIFGSTMGEI-RWPGT--KKTFEGTMTSIFAQIISVALI-L 497 llgprlafvcpkdltpfCpnlFpqYlPvfkfrikIllsflhllllsllas ++ + +++++ + + l +s++ KIAA1094 498 IFDSGVDLNY--------------------------SYAWILGSISTVSL 521 lvgqfGDLvESmfKRdfGiKDSGklIPGHGGiLDRlDsllfaapvfyall l + +D ll+ y+l+ KIAA1094 522 LEAYTTQ----------------------------IDNLLLPL---YLLI 540 ylf<-* l KIAA1094 541 LLM 543 //