hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17094748/chunk_1/iprscan-20080501-17094748.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1092 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00148 296.6 1.8e-84 1 SM00149 218.5 5.9e-61 1 SM00239 77.8 1.3e-18 1 SM00233 33.4 3.2e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/1 169 280 .. 1 82 [] 33.4 3.2e-05 SM00148 1/1 453 597 .. 1 182 [] 296.6 1.8e-84 SM00149 1/1 645 761 .. 1 119 [] 218.5 5.9e-61 SM00239 1/1 782 888 .. 1 92 [] 77.8 1.3e-18 Alignments of top-scoring domains: SM00233: domain 1 of 1, from 169 to 280: score 33.4, E = 3.2e-05 *->vikeGwLlkks..k.swkkryfvLfn..gvLlyyksk..kpkgsipL eG lkk +++++ ryf L+ + ++L + sk+++ k +i++ KIAA1092 169 SMVEGSELKKVrsNsRIYHRYFLLDAdmQSLRWEPSKkdSEKAKIDI 215 sgc.svre.p..................cFeivt.dr..tlllqAeseee +++++vr +++ + ++++ ++ +++ +F ++++++ ++l l A+s++ KIAA1092 216 KSIkEVRTgKntdifrsngisdqisedcAFSVIYgENyeSLDLVANSADV 265 reeWvealqsaiaka<-* ++ Wv+ l+ +i+ KIAA1092 266 ANIWVTGLRYLISYG 280 SM00148: domain 1 of 1, from 453 to 597: score 296.6, E = 1.8e-84 *->qDmdkPLshYfInsSHNsGtfkidiFPFGLDAPEKLRLPPYVTFLLR qDm++PLshYfInsSHN KIAA1092 453 QDMKQPLSHYFINSSHN------------------------------ 469 FTYLtgkQlwgessvegYiqaLkaGcRcvELDcwdgpdgePviyHGhTft TYL+++Q++g+s++ gYi+aLk+GcR vELD+wdgpd+ePviy+GhT+t KIAA1092 470 -TYLIEDQFRGPSDITGYIRALKMGCRSVELDVWDGPDNEPVIYTGHTMT 518 skikLsdVleaIKkfAFvtSpyPEFvIlSLenHcspdqQakmaqmfkeiF s+i ++ V++ I+k+AF +S+yP +Il+LenHcs qQ++m q++k+++ KIAA1092 519 SQIVFRSVIDIINKYAFFASEYP--LILCLENHCSIKQQKVMVQHMKKLL 566 gdlLytkPltsseeypgsnLPsPeqLkgKILLkgK<-* gd+Lyt+ + + e+y LPsP+ LkgKIL+k K KIAA1092 567 GDKLYTTSPNVEESY----LPSPDVLKGKILIKAK 597 SM00149: domain 1 of 1, from 645 to 761: score 218.5, E = 5.9e-61 *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekapt lseLvs+c++v+F++f+ + ++ + ++e++Sf+E a k+++++p KIAA1092 645 LSELVSICKSVQFKEFQVSFQV-QKYWEVCSFNEVL-ASKYANENPG 689 dfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaMq dfv+yN+r L Rv+P+ +R+DSSN+nPq fW +GcQ+VA+NfQTp+++M+ KIAA1092 690 DFVNYNKRFLARVFPSPMRIDSSNMNPQDFWKCGCQIVAMNFQTPGLMMD 739 lNqGmFraNGgCGYVLKPefLR<-* lN G+Fr+NG+CGYVL+P ++R KIAA1092 740 LNIGWFRQNGNCGYVLRPAIMR 761 SM00239: domain 1 of 1, from 782 to 888: score 77.8, E = 1.3e-18 *->tLtvkiisArnLp............DPYVkvs...........kTkv +L++kiis++n p++++++ +++ DPYV v+ ++ + + ++Tk+ KIAA1092 782 LLHIKIISGQNFPkpkgsgakgdvvDPYVYVEihgipadcaeqRTKT 828 vkktlsgfNPvWnEesetFeFevpp...s.LeieVyDk.....dfiGrvt v +++ P+++E +FeF ++ ++ + +++ V D++ +++fiG+ t KIAA1092 829 VHQNGD--APIFDE---SFEFQINLpelAmVRFVVLDDdyigdEFIGQYT 873 ippnnahqhsadglihlsell.ggrh.kl<-* ip +++l++g+rh +l KIAA1092 874 IP--------------FECLQtGYRHvPL 888 //