hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17061808/chunk_1/iprscan-20080501-17061808.nocrc
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Query sequence: KIAA1090
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00317                                                 158.6    6.2e-43   1
SM00249                                                 118.2    9.5e-31   3
SM00570                                                 104.2    1.5e-26   1
SM00293                                                  92.6    4.6e-23   1
SM00508                                                  28.3      0.001   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00249      1/3      66   113 ..     1    39 []    23.6    0.027
SM00249      2/3     183   223 ..     1    39 []    51.3  1.3e-10
SM00293      1/1     228   290 ..     1    84 []    92.6  4.6e-23
SM00570      1/1     361   412 ..     1    62 []   104.2  1.5e-26
SM00317      1/1     413   536 ..     1   114 []   158.6  6.2e-43
SM00508      1/1     537   553 ..     1    17 []    28.3    0.001
SM00249      3/3     591   634 ..     1    39 []    43.2  3.5e-08

Alignments of top-scoring domains:
SM00249: domain 1 of 3, from 66 to 113: score 23.6, E = 0.027
                   *->yC.vCgk..g.llqCd.kgCdrwyHv.Clgpple..epdg.wyCprC
                       C vC++++ +   C  ++C++ yH  C++  +++  ++ +++Cp +
    KIAA1090    66    SCfVCKEskTdVKRCVvTQCGKFYHEaCVKKYPLtvFESRgFRCPLH 112  

                   k<-*
                   +   
    KIAA1090   113 S    113  

SM00249: domain 2 of 3, from 183 to 223: score 51.3, E = 1.3e-10
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgppleepdg.wyCprCk<-*
                      +C vC k+g+ll+C+ +C+ ++H++Cl+++++  dg+w+C+ C+   
    KIAA1090   183    WCfVCSKgGsLLCCE-SCPAAFHPdCLNIEMP--DGsWFCNDCR    223  

SM00293: domain 1 of 1, from 228 to 290: score 92.6, E = 4.6e-23
                   *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk
                      +++ D++w+K + ++wWPA+v++pk +p ni                
    KIAA1090   228    LHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQ--------------- 259  

                   leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-*
                        k+k+ ++++pV+FFg+kd+ +w++++++fP++   
    KIAA1090   260 -----KMKHEIGEFPVFFFGSKDY-YWTHQARVFPYM    290  

SM00570: domain 1 of 1, from 361 to 412: score 104.2, E = 1.5e-26
                   *->ndimtCeCkplddDgelkGegaCgedsdClNRmmElliECsDpssCp
                       +i++C+Ckp+d       e++Cg+ds+ClNRm  l++EC+ p++Cp
    KIAA1090   361    SEIPKCNCKPTD-------ENPCGFDSECLNRM--LMFECH-PQVCP 397  

                   cGsyCsNQrFQkrqy<-*
                   +G++C+NQ+F+krqy   
    KIAA1090   398 AGEFCQNQCFTKRQY    412  

SM00317: domain 1 of 1, from 413 to 536: score 158.6, E = 6.2e-43
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                      +  ++ k++gkGwGl+a++dI+kGef+ eyvGe+i++++   + ++ 
    KIAA1090   413    PETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIdeeecmarikha 459  

                   .......fylfd.....ciDatranggkGniarfiNHSCePNcelifvev
                   ++++ ++fy+   ++++ iDa      kGn++rf+NHSC+PNce+ ++ v
    KIAA1090   460 hendithFYMLTidkdrIIDAGP----KGNYSRFMNHSCQPNCETLKWTV 505  

                   dgfdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                   +g          d+r+++fA  dI++G+ELt++Y+ d+ g+   
    KIAA1090   506 NG----------DTRVGLFAVCDIPAGTELTFNYNLDCLGN    536  

SM00508: domain 1 of 1, from 537 to 553: score 28.3, E = 0.001
                   *->kkqpClCGaanCrGfLg<-*
                      +k  C+CGa+nC+GfLg   
    KIAA1090   537    EKTVCRCGASNCSGFLG    553  

SM00249: domain 3 of 3, from 591 to 634: score 43.2, E = 3.5e-08
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgppleepdg.wyCprCk<-
                       C  Cg++g+l++Cd+k C ++yH++Clg+ ++ p g+w Cp++   
    KIAA1090   591    ECfRCGDgGqLVLCDrKFCTKAYHLsCLGLGKR-PFGkWECPWHH   634  

                   *
                    
    KIAA1090     -   -    

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