hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17061808/chunk_1/iprscan-20080501-17061808.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1090 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00856.18.ls SET domain 196.2 7.4e-56 1 PF00856.18.fs SET domain 194.7 2e-55 1 PF00855.8.fs PWWP domain 81.6 1e-23 1 PF00855.8.ls PWWP domain 83.5 6.2e-22 1 PF00628.19.fs PHD-finger 66.9 4.6e-21 3 PF00628.19.ls PHD-finger 69.9 7.6e-18 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00628.19.fs 2/3 183 225 .. 1 51 [] 55.9 1.6e-17 PF00628.19.ls 1/2 183 225 .. 1 51 [] 57.7 3.5e-14 PF00855.8.ls 1/1 227 301 .. 1 86 [] 83.5 6.2e-22 PF00855.8.fs 1/1 227 301 .. 1 86 [] 81.6 1e-23 PF00856.18.fs 1/1 407 536 .. 1 259 [] 194.7 2e-55 PF00856.18.ls 1/1 407 536 .. 1 259 [] 196.2 7.4e-56 PF00628.19.fs 3/3 591 638 .. 1 51 [] 10.3 0.0066 Alignments of top-scoring domains: PF00628.19.fs: domain 2 of 3, from 183 to 225: score 55.9, E = 1.6e-17 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC +C vC+k gg ll+C++C+ +fH++Cl++ e+p+++W+C KIAA1090 183 WCFVCSK-----GGSLLCCESCPAAFHPDCLNI-----EMPDgsWFC 219 peCkpk<-* ++C+++ KIAA1090 220 NDCRAG 225 PF00628.19.ls: domain 1 of 2, from 183 to 225: score 57.7, E = 3.5e-14 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC +C vC+k gg ll+C++C+ +fH++Cl++ e+p+++W+C KIAA1090 183 WCFVCSK-----GGSLLCCESCPAAFHPDCLNI-----EMPDgsWFC 219 peCkpk<-* ++C+++ KIAA1090 220 NDCRAG 225 PF00855.8.ls: domain 1 of 1, from 227 to 301: score 83.5, E = 6.2e-22 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr ++++ D++w+K++ ++wWPA+v+++k +p ++ k + + ++ KIAA1090 227 KLHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQK------MKHEIGE 267 vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-* ++V+FFg+ +y +w++++r++P+ +e+ ++++++ KIAA1090 268 FPVFFFGSKDY-YWTHQARVFPY----MEGDRGSRYQGV 301 PF00855.8.fs: domain 1 of 1, from 227 to 301: score 81.6, E = 1e-23 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr ++++ D++w+K++ ++wWPA+v+++k +p ++ k + + ++ KIAA1090 227 KLHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQK------MKHEIGE 267 vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-* ++V+FFg+ +y +w++++r++P+ +e+ ++++++ KIAA1090 268 FPVFFFGSKDY-YWTHQARVFPY----MEGDRGSRYQGV 301 PF00856.18.fs: domain 1 of 1, from 407 to 536: score 194.7, E = 2e-55 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae ++k++++ +++kt++kGwGl+a++dI+kGef+ EY+Geli+ ee+ KIAA1090 407 FTKRQYPETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIDEEECM 453 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy r k + + ++++ Y++ +d+ KIAA1090 454 ARI------KHAHENDITHF--YMLTIDK--------------------- 474 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee KIAA1090 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF + +iDA+ kGN++RF KIAA1090 475 -----------------------------------DRIIDAGPKGNYSRF 489 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL +NHSC+PNce+ +++v+ gd r++lfA +dIpaG+EL KIAA1090 490 MNHSCQPNCETLKWTVN--------------GDTRVGLFAVCDIPAGTEL 525 tydYgydksnge<-* t++Y+ ++ g+ KIAA1090 526 TFNYN-LDCLGN 536 PF00856.18.ls: domain 1 of 1, from 407 to 536: score 196.2, E = 7.4e-56 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae ++k++++ +++kt++kGwGl+a++dI+kGef+ EY+Geli+ ee+ KIAA1090 407 FTKRQYPETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIDEEECM 453 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy r k + + ++++ Y++ +d+ KIAA1090 454 ARI------KHAHENDITHF--YMLTIDK--------------------- 474 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee KIAA1090 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF + +iDA+ kGN++RF KIAA1090 475 -----------------------------------DRIIDAGPKGNYSRF 489 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL +NHSC+PNce+ +++v+ gd r++lfA +dIpaG+EL KIAA1090 490 MNHSCQPNCETLKWTVN--------------GDTRVGLFAVCDIPAGTEL 525 tydYgydksnge<-* t++Y+ ++ g+ KIAA1090 526 TFNYN-LDCLGN 536 PF00628.19.fs: domain 3 of 3, from 591 to 638: score 10.3, E = 0.0066 *->yCsvCgkeysdaggdllqCD.g.CdrwfHlaClgpplepeeipeWyC C Cg+ gg l++CD++ C +++Hl+Clg+ +p ++ W C KIAA1090 591 ECFRCGD-----GGQLVLCDrKfCTKAYHLSCLGLGKRPFGK--WEC 630 p..eCkpk<-* p ++C+ + KIAA1090 631 PwhHCDVC 638 //