hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17025315/chunk_1/iprscan-20080501-17025315.nocrc
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Query sequence: KIAA1088
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00491                                                 248.1    7.4e-70   1
SM00488                                                 225.8    3.6e-63   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00488    1/1       9   291 ..     1   447 []   225.8  3.6e-63
SM00491    1/1     563   717 ..     1   160 []   248.1  7.4e-70

Alignments of top-scoring domains:
SM00488: domain 1 of 1, from 9 to 291: score 225.8, E = 3.6e-63
                   *->lefyFPYepIYpiQyefMeelkrvLdrGkigILESPTGTGKTlSLLc
                      +++ FP++p Y +Q e+M  + ++L ++ +gILESPTGTGKTl LLc
    KIAA1088     9    VTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLC 54   

                   ltltwlrsfpekirtdlstrLeevetkikekkdeSeklSdeledwvkera
                    tl+w+++  + i+ +                                  
    KIAA1088    55 TTLAWREHLRDGISAR---------------------------------- 70   

                   qkikliylsrtvsrkdeiEkrleELrklmqkkkrqmrdrdkeeeReksre
                      k+++ +++       +++l    ++++                    
    KIAA1088    71 ---KIAERAQGEL---FPDRALSSWGNAAA-------------------- 94   

                   nLrkepkaerdldlekeee.apseeYesdeesekesksdesedvdeeeek
                                      ++p + Y                        
    KIAA1088    95 -----------------AAgDPIACYTDI--------------------- 106  

                   dkdyfcsryhSqlaqllhelgkepekekvlglsltvSRkntLCinpeVrt
                   +k+ + sr+hSql q++ el+ + +++kv    l+ SR++ LCi+peV++
    KIAA1088   107 PKIIYASRTHSQLTQVINELRNTSYRPKV--CVLG-SREQ-LCIHPEVKK 152  

                   lkknglvvfslkvkvlsLASkdelCrsltaskarkkeKVaknekcakkde
                    ++n+l+               +lCr+ +as+ +                
    KIAA1088   153 QESNHLQI--------------HLCRKKVASRSC---------------- 172  

                   nekaerCeFyentefldkrnDtLALRdlllaEvydiEdLvelGkelglCP
                           Fy+n+e+ +++        +l + ++diEdLv+ G ++++CP
    KIAA1088   173 -------HFYNNVEEKSLE-------QELASPILDIEDLVKSGSKHRVCP 208  

                   YfasRkaiefAnvVvlPYqYLLdpkiRqalsieLkleYkdsIVIfDEAHN
                   Y++sR   ++A ++  PY+YLLd+k R+a +i+Lk    + +VIfDEAHN
    KIAA1088   209 YYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDLK----GTVVIFDEAHN 254  

                   LdnvcisalSselsrrsLerAhknikkyeeriekkslteelrlirendak
                   ++  c++++S +l+  +L+    +++ +++ +e+           +++a 
    KIAA1088   255 VEKMCEESASFDLTPHDLAS---GLDVIDQVLEE-----------QTKAA 290  

                   r<-*
                       
    KIAA1088   291 H    291  

SM00491: domain 1 of 1, from 563 to 717: score 248.1, E = 7.4e-70
                   *->YeyleqvveywkengilenilkkleakkpvfvEgkdsge.selleky
                      Y ++e+ +e w+++++++    k+ea kp+fvE++++g+ se++++y
    KIAA1088   563    YPVMEKSLEFWRARDLAR----KMEALKPLFVEPRSKGSfSETISAY 605  

                   saaiaapgrrnGrGalLlaVarGKlSEGiDFpddlgRNLlaViivGiPFp
                   +a++aapg   ++Ga +laV+rGK SEG+DF+d +gR   +Vi+ G+P+p
    KIAA1088   606 YARVAAPG---STGATFLAVCRGKASEGLDFSDTNGR---GVIVTGLPYP 649  

                   npddpilrarleyldekggrk....qirafdevyendamralnQaiGRai
                   + +dp+++ ++++lde++g+++ ++q+ +++e+y ++a+ra+nQaiGR+i
    KIAA1088   650 PRMDPRVVLKMQFLDEMKGQGgaggQFLSGQEWYRQQASRAVNQAIGRVI 699  

                   RhknDyGvvvllDkRyar<-*
                   Rh++DyG+v+l+D+R+a    
    KIAA1088   700 RHRQDYGAVFLCDHRFAF    717  

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