hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17025315/chunk_1/iprscan-20080501-17025315.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1088 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06733.6.ls DEAD_2 288.9 8.8e-84 1 PF06733.6.fs DEAD_2 287.1 3e-83 1 PF04851.6.fs Type III restriction enzyme, res subunit 20.5 2.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04851.6.fs 1/1 14 51 .. 1 52 [. 20.5 2.1e-05 PF06733.6.fs 1/1 111 272 .. 1 210 [] 287.1 3e-83 PF06733.6.ls 1/1 111 272 .. 1 210 [] 288.9 8.8e-84 Alignments of top-scoring domains: PF04851.6.fs: domain 1 of 1, from 14 to 51: score 20.5, E = 2.1e-05 *->kiklRpyQeeAirrllesiekgelklaeglkdkdkkkrglivmATGs ++++++Q+e +++le++++ +g++ ++TG+ KIAA1088 14 PFQPYKCQQEYMTKVLECLQQK--------------VNGILESPTGT 46 GKTlt<-* GKTl+ KIAA1088 47 GKTLC 51 PF06733.6.fs: domain 1 of 1, from 111 to 272: score 287.1, E = 3e-83 *->YcSRTHsQleQvikELkklpsyrkkklGyeepkvrgvivLgSRknlC Y+SRTHsQl+Qvi+EL+++ syr+ v+vLgSR++lC KIAA1088 111 YASRTHSQLTQVINELRNT-SYRP-----------KVCVLGSREQLC 145 inpeVkklkkgeaiNekCkelvksgkrekeeektEkPwktKKriaenves i+peVkk++++++ + C+++v+s+ s KIAA1088 146 IHPEVKKQESNHLQIHLCRKKVASR------------------------S 171 CpfynnlkkiedlkkllvkdllgnevydiEdLveyGkklglCPYYlsRel C+fynn + k l +++l ++++diEdLv+ G k+++CPYYlsR l KIAA1088 172 CHFYNNV----EEKSL--EQELASPILDIEDLVKSGSKHRVCPYYLSRNL 215 ipdAdiIilPYnYLLdpkiReslkkelGinlknsiVIfDEAHNIedvcie ++AdiI++PYnYLLd+k R+++ +i+lk+++VIfDEAHN+e++c+e KIAA1088 216 KQQADIIFMPYNYLLDAKSRRAH----NIDLKGTVVIFDEAHNVEKMCEE 261 EeslSfeisersL<-* s+Sf++++++L KIAA1088 262 --SASFDLTPHDL 272 PF06733.6.ls: domain 1 of 1, from 111 to 272: score 288.9, E = 8.8e-84 *->YcSRTHsQleQvikELkklpsyrkkklGyeepkvrgvivLgSRknlC Y+SRTHsQl+Qvi+EL+++ syr+ v+vLgSR++lC KIAA1088 111 YASRTHSQLTQVINELRNT-SYRP-----------KVCVLGSREQLC 145 inpeVkklkkgeaiNekCkelvksgkrekeeektEkPwktKKriaenves i+peVkk++++++ + C+++v+s+ s KIAA1088 146 IHPEVKKQESNHLQIHLCRKKVASR------------------------S 171 CpfynnlkkiedlkkllvkdllgnevydiEdLveyGkklglCPYYlsRel C+fynn + k l +++l ++++diEdLv+ G k+++CPYYlsR l KIAA1088 172 CHFYNNV----EEKSL--EQELASPILDIEDLVKSGSKHRVCPYYLSRNL 215 ipdAdiIilPYnYLLdpkiReslkkelGinlknsiVIfDEAHNIedvcie ++AdiI++PYnYLLd+k R+++ +i+lk+++VIfDEAHN+e++c+e KIAA1088 216 KQQADIIFMPYNYLLDAKSRRAH----NIDLKGTVVIFDEAHNVEKMCEE 261 EeslSfeisersL<-* s+Sf++++++L KIAA1088 262 --SASFDLTPHDL 272 //