hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17011132/chunk_1/iprscan-20080501-17011132.nocrc
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Query sequence: KIAA1087
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00845 caca: sodium/calcium exchanger 1              2442.3          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00845   1/1      27   952 .]     1  1067 []  2442.3        0

Alignments of top-scoring domains:
TIGR00845: domain 1 of 1, from 27 to 952: score 2442.3, E = 0
                   *->llkliltPllsvgfhlllavflLflevdeaeaaylneasssdsntge
                       +   ++Pl++vg+ llla++ + + +++++++++++a++sd +tg+
    KIAA1087    27    TPPPPMAPLALVGVTLLLAAPPCSGAATPTPSLPPPPANDSDTSTGG 73   

                   ctGsylsrrLrqvshGeeGdeGaPsqmddeLeqmtkvhGeaPdaeeLreC
                   c+Gsy+                                           C
    KIAA1087    74 CQGSYR-------------------------------------------C 80   

                   keGviLPiWePqnpSvGDKlARatVYFValvYmFLGVSIIADRFMASIEV
                   ++Gv+LP+WeP++pS+GDK+ARa+VYFVa+vYmFLGVSIIADRFMA+IEV
    KIAA1087    81 QPGVLLPVWEPDDPSLGDKAARAVVYFVAMVYMFLGVSIIADRFMAAIEV 130  

                   ITSkErevvvKkPngettvvtVRIWNETVSNLTLMALGSSAPEILLSVIE
                   ITSkE+e++++k+nget+v+tVRIWNETVSNLTLMALGSSAPEILLSVIE
    KIAA1087   131 ITSKEKEITITKANGETSVGTVRIWNETVSNLTLMALGSSAPEILLSVIE 180  

                   VcghnFeAGDLGPsTIVGSAAFNLFiIIAiCVyVIPaGEvRkIKHLrVFF
                   VcghnF+AG+LGP+TIVGSAAFN+F++IA+C+yVIPaGE+RkIKHLrVFF
    KIAA1087   181 VCGHNFQAGELGPGTIVGSAAFNMFVVIAVCIYVIPAGESRKIKHLRVFF 230  

                   VTAtWSVFAYvWLYlILAVfSPGVVeVWEGlLTllFFPltVvtAyiADrR
                   VTA+WS+FAYvWLYlILAVfSPGVV+VWE+lLTl+FFP++Vv+A++AD+R
    KIAA1087   231 VTASWSIFAYVWLYLILAVFSPGVVQVWEALLTLVFFPVCVVFAWMADKR 280  

                   LLfYKYlyKrYRagkqrGiiIatEgdepkmdaeieldgkmvgshvgnfLD
                   LLfYKY+yKrYR+++++GiiI++Egd+pk+   ieldg++vg + +++L+
    KIAA1087   281 LLFYKYVYKRYRTDPRSGIIIGAEGDPPKS---IELDGTFVGAEAPGELG 327  

                   galvg.levkefdQddeEaRrEyIeiLkELrqKhPdkdleqLeemAeyev
                   g++ g++e++e+d    ++RrE+I+iLk+L+qKhPdkdleqL+++A+y++
    KIAA1087   328 GLGPGpAEARELD----ASRREVIQILKDLKQKHPDKDLEQLVGIANYYA 373  

                   lsrqqKSRAFYRIQATRkmtGaGNIlKKhaadaarkalsmkaqevatdde
                   l++qqKSRAFYRIQATR+mtGaGN+l++haada r+a+ +     ++ ++
    KIAA1087   374 LLHQQKSRAFYRIQATRLMTGAGNVLRRHAADASRRAAPA----EGAGED 419  

                   eeDeaskiFFePghYtvLENcGsflltVvRrGGDltkTvyVDYkTEDGtA
                   e+D+as+iFFeP++Y++LENcGs+ll+V+++GG++++T+yVDY+TEDG+A
    KIAA1087   420 EDDGASRIFFEPSLYHCLENCGSVLLSVTCQGGEGNSTFYVDYRTEDGSA 469  

                   nAGSDYvyteGTLvFkPgetqkefrIgiIDDDiFEEDEhFyvRLsNlrVg
                   +AGSDY+y+eGTLvFkPgetqke+rIgiIDDDiFEEDEhF+vRL+NlrVg
    KIAA1087   470 KAGSDYEYSEGTLVFKPGETQKELRIGIIDDDIFEEDEHFFVRLLNLRVG 519  

                   sEqdedGileantasagLPvaqLasPllATVmILDDDHAGIFtFeedvfh
                      d++G++e++++++  P+++L++PllATV+ILDDDHAGIF+F+++++h
    KIAA1087   520 ---DAQGMFEPDGGGR--PKGRLVAPLLATVTILDDDHAGIFSFQDRLLH 564  

                   VsESiGelevkvlRtSGARGtVivPyrTveGTAtggGkDyEdaeGElvFe
                   VsE++G+++v+v+R+SGARGtV++PyrTv+GTA+ggG++yEda+GEl+F+
    KIAA1087   565 VSECMGTVDVRVVRSSGARGTVRLPYRTVDGTARGGGVHYEDACGELEFG 614  

                   ndEteKtirvkIvDdEeYEKnetFfIeLgePrlvkkgislsriqerfqrr
                   +dEt+Kt++vkIvDdEeYEK+++FfIeLg+P+++k+gis           
    KIAA1087   615 DDETMKTLQVKIVDDEEYEKKDNFFIELGQPQWLKRGIS----------- 653  

                   merkrGssvaseskDsnteaALllnekstravtvdlqpssdprRssqtns
                                       ALlln+      +                 
    KIAA1087   654 --------------------ALLLNQ------G----------------- 660  

                   PhLtsrfrnrlgSwiagmkgeydddrkltseeeeakrIAEmGKPrlGEnt
                                         d+drklt+eeeea+rIAEmGKP+lGEn+
    KIAA1087   661 ----------------------DGDRKLTAEEEEARRIAEMGKPVLGENC 688  

                   kleViIeESyEFKstVDKLiKKaNlalVvGThSWREQFiEAiTVsAgddD
                   +leViIeESy+FK+tVDKLiKK+NlalV+GThSWREQF+EAiTVsAg  D
    KIAA1087   689 RLEVIIEESYDFKNTVDKLIKKTNLALVIGTHSWREQFLEAITVSAG--D 736  

                   ddddEdGeDGeekEEklPSCfDYVMHFLTvFWKVLFAfVPPTdYcgGWAc
                   ++++EdG+    +EE+lPSCfDYVMHFLTvFWKVLFA+VPPT+Yc+GWAc
    KIAA1087   737 EEEEEDGS----REERLPSCFDYVMHFLTVFWKVLFACVPPTEYCHGWAC 782  

                   FvVSIlvIGvLTAiIGDLAShFGCtiGLKDSVTAVvFVALGTSVPDTFAS
                   F+VSIlvIG+LTA+IGDLAShFGCt+GLKDSV+AVvFVALGTS+PDTFAS
    KIAA1087   783 FGVSILVIGLLTALIGDLASHFGCTVGLKDSVNAVVFVALGTSIPDTFAS 832  

                   KVAAlqDkyADasIGNVTGSNAVNVFLGIGiAWSiAAIYHaaqGtkFkVd
                   KVAAlqD++ADasIGNVTGSNAVNVFLG+G+AWS+AA+Y+a+qG++F+V+
    KIAA1087   833 KVAALQDQCADASIGNVTGSNAVNVFLGLGVAWSVAAVYWAVQGRPFEVR 882  

                   PGTLAFSVtLFcvfAficIivLlyRRWrkkiGGELGGPrgcKlltsaifv
                   +GTLAFSVtLF+vfAf++I+vLlyRR r++iGGELGGPrg+Kl+t+a+f+
    KIAA1087   883 TGTLAFSVTLFTVFAFVGIAVLLYRR-RPHIGGELGGPRGPKLATTALFL 931  

                   sLWllYvlfasLeAYChIkGF<-*
                   +LWllY+lfasLeAYChI+GF   
    KIAA1087   932 GLWLLYILFASLEAYCHIRGF    952  

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