hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17011132/chunk_1/iprscan-20080501-17011132.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1087 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03160.5.ls Calx-beta domain 332.2 8.3e-97 2 PF03160.5.fs Calx-beta domain 328.4 1.2e-95 2 PF01699.14.ls Sodium/calcium exchanger protein 216.5 5.7e-62 2 PF01699.14.fs Sodium/calcium exchanger protein 212.5 9.2e-61 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01699.14.fs 1/2 115 274 .. 1 139 [] 107.9 2.8e-29 PF01699.14.ls 1/2 115 274 .. 1 139 [] 109.9 6.9e-30 PF03160.5.fs 1/2 415 514 .. 1 109 [] 167.7 2.7e-47 PF03160.5.ls 1/2 415 514 .. 1 109 [] 169.6 7.1e-48 PF03160.5.ls 2/2 543 643 .. 1 109 [] 162.6 9.6e-46 PF03160.5.fs 2/2 543 643 .. 1 109 [] 160.6 3.6e-45 PF01699.14.fs 2/2 788 941 .. 1 139 [] 104.6 2.8e-28 PF01699.14.ls 2/2 788 941 .. 1 139 [] 106.6 6.9e-29 Alignments of top-scoring domains: PF01699.14.fs: domain 1 of 2, from 115 to 274: score 107.9, E = 2.8e-29 *->lliilladllvdsaeaiae..................vlgisptviG l+++++ad+++ ++e+i ++++ + ++ +++++ ++v +++tv KIAA1087 115 LGVSIIADRFMAAIEVITSkekeititkangetsvgtVRIWNETVSN 161 lTllAlgtslPEliasiiaalkrlgtg.tekkgdlalGnviGSnifNill lTl+Alg+s+PE++ s+i + +++ g+l+ G+++GS+ fN+++ KIAA1087 162 LTLMALGSSAPEILLSVIEVCG----HnFQ-AGELGPGTIVGSAAFNMFV 206 vlGlaalispir.......vlg.plsldfsllllvtlllllflllsdgrl v++++ + p++++++ ++ + ++ +s++ +v+l+l+l ++ s+g++ KIAA1087 207 VIAVCIYVIPAGesrkikhLRVfFVTASWSIFAYVWLYLILAVF-SPGVV 255 srleGlvLlllYivyllfl<-* ++e+l+ l+++ v ++f+ KIAA1087 256 QVWEALLTLVFFPVCVVFA 274 PF01699.14.ls: domain 1 of 2, from 115 to 274: score 109.9, E = 6.9e-30 *->lliilladllvdsaeaiae..................vlgisptviG l+++++ad+++ ++e+i ++++ + ++ +++++ ++v +++tv KIAA1087 115 LGVSIIADRFMAAIEVITSkekeititkangetsvgtVRIWNETVSN 161 lTllAlgtslPEliasiiaalkrlgtg.tekkgdlalGnviGSnifNill lTl+Alg+s+PE++ s+i + +++ g+l+ G+++GS+ fN+++ KIAA1087 162 LTLMALGSSAPEILLSVIEVCG----HnFQ-AGELGPGTIVGSAAFNMFV 206 vlGlaalispir.......vlg.plsldfsllllvtlllllflllsdgrl v++++ + p++++++ ++ + ++ +s++ +v+l+l+l ++ s+g++ KIAA1087 207 VIAVCIYVIPAGesrkikhLRVfFVTASWSIFAYVWLYLILAVF-SPGVV 255 srleGlvLlllYivyllfl<-* ++e+l+ l+++ v ++f+ KIAA1087 256 QVWEALLTLVFFPVCVVFA 274 PF03160.5.fs: domain 1 of 2, from 415 to 514: score 167.7, E = 2.7e-47 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr + +++Dd a++++Fep+ y++ lEn+G+v + V++ gg e ++ KIAA1087 415 GAGEDEDD-GASRIFFEPSLYHC--LENCGSVLLSVTCQGG--EGNS 456 tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv t++V+yrTeDG+A+aG sDYe+ egt L+F+Pge t+k+ +++iiDDd+ KIAA1087 457 TFYVDYRTEDGSAKAG--SDYEYSEGT-LVFKPGE-TQKELRIGIIDDDI 502 yEgdEnFfvrLs<-* +E+dE+FfvrL KIAA1087 503 FEEDEHFFVRLL 514 PF03160.5.ls: domain 1 of 2, from 415 to 514: score 169.6, E = 7.1e-48 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr + +++Dd a++++Fep+ y++ lEn+G+v + V++ gg e ++ KIAA1087 415 GAGEDEDD-GASRIFFEPSLYHC--LENCGSVLLSVTCQGG--EGNS 456 tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv t++V+yrTeDG+A+aG sDYe+ egt L+F+Pge t+k+ +++iiDDd+ KIAA1087 457 TFYVDYRTEDGSAKAG--SDYEYSEGT-LVFKPGE-TQKELRIGIIDDDI 502 yEgdEnFfvrLs<-* +E+dE+FfvrL KIAA1087 503 FEEDEHFFVRLL 514 PF03160.5.ls: domain 2 of 2, from 543 to 643: score 162.6, E = 9.6e-46 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr atvtIlDdd+ag+++F+++ +V E++G+v+v+Vvr +g +r+ KIAA1087 543 ATVTILDDDHAGIFSFQDRLLHV--SECMGTVDVRVVRSSG---ARG 584 tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv tV +yrT+DGTA +G g++Ye+++g+ L Fg++e t+k+ v+i+DD++ KIAA1087 585 TVRLPYRTVDGTARGG-GVHYEDACGE-LEFGDDE-TMKTLQVKIVDDEE 631 yEgdEnFfvrLs<-* yE+ +nFf++L+ KIAA1087 632 YEKKDNFFIELG 643 PF03160.5.fs: domain 2 of 2, from 543 to 643: score 160.6, E = 3.6e-45 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr atvtIlDdd+ag+++F+++ +V E++G+v+v+Vvr +g +r+ KIAA1087 543 ATVTILDDDHAGIFSFQDRLLHV--SECMGTVDVRVVRSSG---ARG 584 tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv tV +yrT+DGTA +G g++Ye+++g+ L Fg++e t+k+ v+i+DD++ KIAA1087 585 TVRLPYRTVDGTARGG-GVHYEDACGE-LEFGDDE-TMKTLQVKIVDDEE 631 yEgdEnFfvrLs<-* yE+ +nFf++L+ KIAA1087 632 YEKKDNFFIELG 643 PF01699.14.fs: domain 2 of 2, from 788 to 941: score 104.6, E = 2.8e-28 *->lliilladllvdsaeaiaevlgisptviGlTllAlgtslPEliasii l i ll+ l++d a++++++ g+ ++v +++++Algts+P+++as + KIAA1087 788 LVIGLLTALIGDLASHFGCTVGLKDSVNAVVFVALGTSIPDTFASKV 834 aalkrlgtg.tekkgdlalGnviGSnifNillvlGlaalispir...... aal+ +++ +d ++Gnv+GSn +N++l+lG+a+ +++ + +++ KIAA1087 835 AALQ----DqC---ADASIGNVTGSNAVNVFLGLGVAWSVAAVYwavqgr 877 .vlg.plsldfsllllvtlllllflll.............sdgrlsrleG ++++++ +l fs++l+++++++ +++l +++++ +++ ++++ + + KIAA1087 878 pFEVrTGTLAFSVTLFTVFAFVGIAVLlyrrrphiggelgGPRGPKLATT 927 lvLlllYivyllfl<-* +++l+l+++y+lf+ KIAA1087 928 ALFLGLWLLYILFA 941 PF01699.14.ls: domain 2 of 2, from 788 to 941: score 106.6, E = 6.9e-29 *->lliilladllvdsaeaiaevlgisptviGlTllAlgtslPEliasii l i ll+ l++d a++++++ g+ ++v +++++Algts+P+++as + KIAA1087 788 LVIGLLTALIGDLASHFGCTVGLKDSVNAVVFVALGTSIPDTFASKV 834 aalkrlgtg.tekkgdlalGnviGSnifNillvlGlaalispir...... aal+ +++ +d ++Gnv+GSn +N++l+lG+a+ +++ + +++ KIAA1087 835 AALQ----DqC---ADASIGNVTGSNAVNVFLGLGVAWSVAAVYwavqgr 877 .vlg.plsldfsllllvtlllllflll.............sdgrlsrleG ++++++ +l fs++l+++++++ +++l +++++ +++ ++++ + + KIAA1087 878 pFEVrTGTLAFSVTLFTVFAFVGIAVLlyrrrphiggelgGPRGPKLATT 927 lvLlllYivyllfl<-* +++l+l+++y+lf+ KIAA1087 928 ALFLGLWLLYILFA 941 //