hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16592890/chunk_1/iprscan-20080501-16592890.nocrc
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Query sequence: KIAA1086
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00572                                                 550.4     7e-161   1
SM00451                                                 100.5      2e-25   3
SM00355                                                  48.0    1.3e-09   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00451      1/3     231   265 ..     1    37 []    38.6  8.2e-07
SM00355      1/3     234   258 ..     1    23 []    15.4      5.7
SM00451      2/3     279   313 ..     1    37 []    33.9  2.2e-05
SM00355      2/3     282   306 ..     1    23 []    16.6      3.5
SM00451      3/3     428   462 ..     1    37 []    28.0   0.0013
SM00355      3/3     431   455 ..     1    23 []    16.0        5
SM00572      1/1     615   867 ..     1   263 []   550.4   7e-161

Alignments of top-scoring domains:
SM00451: domain 1 of 3, from 231 to 265: score 38.6, E = 8.2e-07
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                       + +yC++C++++  +++++ + Hl G+kH+k+++ +   
    KIAA1086   231    LQLHYCDICKISCA-GPQTY-REHLGGQKHRKKEAAQ    265  

SM00355: domain 1 of 3, from 234 to 258: score 15.4, E = 5.7
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      + C+i C+ s+  ++ +++H+ +++H   
    KIAA1086   234    HYCDI-CKISCAGPqTYREHLGgqKH    258  

SM00451: domain 2 of 3, from 279 to 313: score 33.9, E = 2.2e-05
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      + +++C+lC v+++ +  ++ +aH++G kH+k  k++   
    KIAA1086   279    QAQLHCDLCAVSCT-GADAY-AAHIRGSKHQKVFKLH    313  

SM00355: domain 2 of 3, from 282 to 306: score 16.6, E = 3.5
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C++ C  s++ ++a+  H+r+++H   
    KIAA1086   282    LHCDL-CAVSCTGAdAYAAHIRgsKH    306  

SM00451: domain 3 of 3, from 428 to 462: score 28.0, E = 0.0013
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      + +f+CklC+++f+ d ++  + H++G++H+ +++k    
    KIAA1086   428    VLRFHCKLCECSFN-DLNAK-DLHVRGRRHRLQYRKK    462  

SM00355: domain 3 of 3, from 431 to 455: score 16.0, E = 5
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C++ C  sf++ +a   H+r+++H   
    KIAA1086   431    FHCKL-CECSFNDLnAKDLHVRgrRH    455  

SM00572: domain 1 of 1, from 615 to 867: score 550.4, E = 7e-161
                   *->tLkGVmRVGslaKGlllkGDrdaeLVllCkekPTseLlariarklpe
                      +LkGVmRVG+laKGlll+GDr+++L+llC+ekPT++Ll+ria++lp+
    KIAA1086   615    VLKGVMRVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPR 661  

                   qlkavtedkYeVeqnvEaaiiikstkeptmevgitltSplareelliatv
                   ql++vted+YeV++++Ea+i+i+s++ep+m+v+i++tSpl+re++++++ 
    KIAA1086   662 QLQMVTEDEYEVSSDPEANIVISSCEEPRMQVTISVTSPLMREDPSTDPG 711  

                   penlrkldPpdvLDrkkclsaLAslRHakWFqarAsgLqPafiqscvivI
                   +e+ +++d++dvL++kkcl++LA+lRHa+WFqarAsgLq     +cvivI
    KIAA1086   712 VEE-PQADAGDVLSPKKCLESLAALRHARWFQARASGLQ-----PCVIVI 755  

                   RiLRDLcnRvPtwqpLsaWaLELLvekaIsNnsarqplglGdAlRRvlEc
                   R+LRDLc+RvPtw++L+aWa+ELLveka+s  sa+ plg+GdA+RRvlEc
    KIAA1086   756 RVLRDLCRRVPTWGALPAWAMELLVEKAVS--SAAGPLGPGDAVRRVLEC 803  

                   LAsGilLpgspGLlDPCEkdntdvltalTlqQredvTasAQtlLRllAFg
                   +A+G+lL+++pGL+DPCE+d+td+l+++Tlq+redvTasAQ++LR+lAF+
    KIAA1086   804 VATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTASAQHALRMLAFR 853  

                   nDQihkvLGmdplpsk<-*
                     Q+hkvLGmd lp++   
    KIAA1086   854 --QTHKVLGMDLLPPR    867  

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