hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16560357/chunk_1/iprscan-20080501-16560357.nocrc
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Query sequence: KIAA1084
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 129.4    3.8e-34   6

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/6     139   161 ..     1    23 []    23.1    0.038
SM00355      2/6     169   192 ..     1    23 []    19.2      0.6
SM00355      3/6     262   284 ..     1    23 []    13.3       10
SM00355      4/6     655   677 ..     1    23 []    25.0     0.01
SM00355      5/6     683   705 ..     1    23 []    23.1     0.04
SM00355      6/6     711   734 ..     1    23 []    25.8   0.0061

Alignments of top-scoring domains:
SM00355: domain 1 of 6, from 139 to 161: score 23.1, E = 0.038
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C++  ss + Lk H+++H   
    KIAA1084   139    YQCSL-CKFLSSSFsVLKDHIKQH    161  

SM00355: domain 2 of 6, from 169 to 192: score 19.2, E = 0.6
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C++ C+ + +s+++L+ H+ + H   
    KIAA1084   169    LMCSE-CHITSRSQeELEAHVVnDH    192  

SM00355: domain 3 of 6, from 262 to 284: score 13.3, E = 10
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C++++ +++ Lk H  +H   
    KIAA1084   262    YRCLF-CSYTCGQQrMLKTHAWKH    284  

SM00355: domain 4 of 6, from 655 to 677: score 25.0, E = 0.01
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C+++  +k+  k+H+rvH   
    KIAA1084   655    YRCRL-CHYTSGNKgYIKQHLRVH    677  

SM00355: domain 5 of 6, from 683 to 705: score 23.1, E = 0.04
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cpi C     + ++L+ Hm  H   
    KIAA1084   683    YQCPI-CEHIADNSkDLESHMIHH    705  

SM00355: domain 6 of 6, from 711 to 734: score 25.8, E = 0.0061
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C +sf+ k++L++H r++H   
    KIAA1084   711    YQCKQ-CEESFHYKsQLRNHEReQH    734  

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