hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16560357/chunk_1/iprscan-20080501-16560357.nocrc
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Query sequence: KIAA1084
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         103.6    5.5e-28   6
PF00096.16.fs Zinc finger, C2H2 type                          91.8      2e-24   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   5/6     683   705 ..     1    24 []    19.3    0.013
PF00096.16.fs   6/6     711   734 ..     1    24 []    22.9  0.00019
PF00096.16.ls   6/6     711   734 ..     1    24 []    24.8  0.00028

Alignments of top-scoring domains:
PF00096.16.ls: domain 5 of 6, from 683 to 705: score 19.3, E = 0.013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C     ++++L++H+  H   
    KIAA1084   683    YQCP-ICEHIADNSKDLESHMIHH    705  

PF00096.16.fs: domain 6 of 6, from 711 to 734: score 22.9, E = 0.00019
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+ +C +sF  ks+L++H r +H   
    KIAA1084   711    YQCK-QCEESFHYKSQLRNHEREqH    734  

PF00096.16.ls: domain 6 of 6, from 711 to 734: score 24.8, E = 0.00028
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+ +C +sF  ks+L++H r +H   
    KIAA1084   711    YQCK-QCEESFHYKSQLRNHEREqH    734  

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