hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16542414/chunk_1/iprscan-20080501-16542414.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1083
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00745                                                  90.5      2e-22   1
SM00382                                                  69.8    3.3e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00745    1/1     116   194 ..     1    81 []    90.5    2e-22
SM00382    1/1     342   478 ..     1    92 []    69.8  3.3e-16

Alignments of top-scoring domains:
SM00745: domain 1 of 1, from 116 to 194: score 90.5, E = 2e-22
                   *->trdylqkAieliskAlkaDedv.agdyeeAlelYkkgieyLlqgikv
                      +r ++++A+e+is Al++Ded++ag++e+A e+Ykkgie L++gi+v
    KIAA1083   116    VRVFHKQAFEYISIALRIDEDEkAGQKEQAVEWYKKGIEELEKGIAV 162  

                   ekpsekrrealkakareYldRAeeikkylderlkp<-*
                    +++   ++  +++ar+++ ++++++ ++++rl+    
    KIAA1083   163 IVTG---QGEQCERARRLQAKMMTNLVMAKDRLQL    194  

SM00382: domain 1 of 1, from 342 to 478: score 69.8, E = 3.3e-16
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge.........gg
                      p + +ll+GppG GKT la+a+a +++  ++ i++ +  ++  ++g+
    KIAA1083   342    PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAsltskyvgeGE 388  

                   qrirlalalark...dvlllDEitslld......................
                   + +r ++a ar+ +++++++DE++sll ++++++++ +++++ + + + +
    KIAA1083   389 KLVRALFAVARElqpSIIFIDEVDSLLCerregehdasrrlktefliefd 438  

                   .........vtviattn...dldpallrrrfdrrivllril<-*
                   + ++ ++++v v+++tn++++ld+a+lr rf +r+++ +++   
    KIAA1083   439 gvqsagddrVLVMGATNrpqELDEAVLR-RFIKRVYVSLPN    478  

//