hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16542414/chunk_1/iprscan-20080501-16542414.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1083 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00004.19.fs ATPase family associated with various cellul 258.5 6.6e-78 1 PF00004.19.ls ATPase family associated with various cellul 260.4 3.3e-75 1 PF07728.4.fs ATPase family associated with various cellul 25.0 4.8e-07 2 PF07728.4.ls ATPase family associated with various cellul 9.9 0.00029 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00004.19.fs 1/1 345 530 .. 1 215 [] 258.5 6.6e-78 PF00004.19.ls 1/1 345 530 .. 1 215 [] 260.4 3.3e-75 PF07728.4.ls 1/1 345 476 .. 1 184 [] 9.9 0.00029 Alignments of top-scoring domains: PF00004.19.fs: domain 1 of 1, from 345 to 530: score 258.5, E = 6.6e-78 *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv g+LL+GPPG GKT+lAkavA e++a+f++is+ +l+skyvGe+ek+v KIAA1083 345 GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 391 ralfelArkslkaaPspiiFIDEiDalapkRgd.egdvssrvvnqLltem ralf Ar+ +Ps iiFIDE+D+l R ++e+d+s+r++ ++l+e KIAA1083 392 RALFAVAREL---QPS-IIFIDEVDSLLCERREgEHDASRRLKTEFLIEF 437 DLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrrie D g+ + ++v+v++aTNrp++lD+A lr Rf +r++ KIAA1083 438 D----GVQSAG--------DDRVLVMGATNRPQELDEAVLR--RFIKRVY 473 vplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrtpg v lP+ee Rl lk++l k l + +l + lAr+t+g KIAA1083 474 VSLPNEETRLLLLKNLLCKQGSPL--------TQKELAQ----LARMTDG 511 fsgadlaalcreAalralr<-* +sg+dl+al+++Aal ++r KIAA1083 512 YSGSDLTALAKDAALGPIR 530 PF00004.19.ls: domain 1 of 1, from 345 to 530: score 260.4, E = 3.3e-75 *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv g+LL+GPPG GKT+lAkavA e++a+f++is+ +l+skyvGe+ek+v KIAA1083 345 GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 391 ralfelArkslkaaPspiiFIDEiDalapkRgd.egdvssrvvnqLltem ralf Ar+ +Ps iiFIDE+D+l R ++e+d+s+r++ ++l+e KIAA1083 392 RALFAVAREL---QPS-IIFIDEVDSLLCERREgEHDASRRLKTEFLIEF 437 DLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrrie D g+ + ++v+v++aTNrp++lD+A lr Rf +r++ KIAA1083 438 D----GVQSAG--------DDRVLVMGATNRPQELDEAVLR--RFIKRVY 473 vplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrtpg v lP+ee Rl lk++l k l + +l + lAr+t+g KIAA1083 474 VSLPNEETRLLLLKNLLCKQGSPL--------TQKELAQ----LARMTDG 511 fsgadlaalcreAalralr<-* +sg+dl+al+++Aal ++r KIAA1083 512 YSGSDLTALAKDAALGPIR 530 PF07728.4.ls: domain 1 of 1, from 345 to 476: score 9.9, E = 0.00029 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg g+lL GpPG GK++la+ +a+ ++ +f + +++ L+ KIAA1083 345 GLLLFGPPGNGKTMLAKAVAAES----NATFF------NISAASLTS 381 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras + LvrA a+ +e + i+++DE++ KIAA1083 382 KYVGEG------------EKLVRALF-AVAREL---QPSIIFIDEVD--- 412 pevlnaLlslLderrlllpdggelvkvapydklaerg.reeldlwklgrl slL err d +++k + ++ ++++ KIAA1083 413 --------SLLCERREGEHDASRRLKTEFLIEFDGVQsAGD--------- 445 ihd.frliataNpldgprglnelsaALrrRFlfvtvdpp<-* d++ +++++N+++ el++A++rRF + + KIAA1083 446 --DrVLVMGATNRPQ------ELDEAVLRRFIKRVYVSL 476 //