hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16523825/chunk_1/iprscan-20080501-16523825.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1082 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00558 232.4 3.8e-65 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00558 1/1 1524 1747 .. 1 214 [] 232.4 3.8e-65 Alignments of top-scoring domains: SM00558: domain 1 of 1, from 1524 to 1747: score 232.4, E = 3.8e-65 *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv +++++++++ +lP++eyt+++ g+lnl+s lp ++++ pd+ KIAA1082 1524 MPTRFEDLMENLPLPEYTKRD---GRLNLASRLP-----SYFVRPDL 1562 gkPkpkpylymGma.E.sr.gstTpwHiDdydlySvNylhqgage..... g pk+y ++G ++++r+ +tT++H+D++d +vN++++++ + +++ KIAA1082 1563 G---PKMYNAYGLItAeDRrVGTTNLHLDVSD--AVNVMVYVGIPigega 1607 ...........................d.GKrWyliPpedaeklekllkk ++++ ++ ++++ ++ ++++ +++++++G++W++ + +daek+++ll+k KIAA1082 1608 hdeevlktidegdadevtkqrihdgkeKpGALWHIYAAKDAEKIRELLRK 1657 hgkef.hi.stapdlfkeqpdllihlstwispevlkkrlkeeperPlfqg g+e++++++ +++++ih+++w++++ l+krl+ee+ g KIAA1082 1658 VGEEQgQEnP--------PDHDPIHDQSWYLDQTLRKRLYEEY------G 1693 vpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNFaspewlpmglrl v+ + +vQ +G++vfiP+G++H+V nl +++i+va +F+spe++ +++rl KIAA1082 1694 VQGWAIVQFLGDAVFIPAGAPHQVHNL-YSCIKVAEDFVSPEHVKHCFRL 1742 veelr<-* ++e+r KIAA1082 1743 TQEFR 1747 //