hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16473439/chunk_1/iprscan-20080501-16473439.nocrc
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Query sequence: KIAA1079
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 144.2    1.4e-38   1
SM00220                                                  64.2    1.6e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     159   429 ..     1   280 []   144.2  1.4e-38
SM00220    1/1     159   432 ..     1   231 []    64.2  1.6e-14

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 159 to 429: score 144.2, E = 1.4e-38
                   *->ltlgkkLGeGaFGeVykGtlk.....ieVAVKtLkeda....keeFl
                      l  ++++G+G FG+V +G+ +++++   V VK Lk++a+++++  Fl
    KIAA1079   159    LNYIQEIGNGWFGKVLLGEIYtgtsvARVIVKELKASAnpkeQDTFL 205  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                   +  +    l  +HpNi++++G c+e         P+++v+E++++GdL+ 
    KIAA1079   206 KNGEPYYIL--QHPNILQCVGQCVEA-------IPYLLVFEFCDLGDLKA 246  

                   yLrknrpk....lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvg
                   yLr+ +++ +++ ++  L  +A  +A+G +  ++ +f H DLA RNc ++
    KIAA1079   247 YLRSEQEHmrgdSQTMLLQRMACEVAAGLAAMHKLHFLHSDLALRNCFLT 296  

                   enkvvKIsDFGL..sRdlyddDkkGeskdyYrkkggkggktllPirWmAP
                   +++ vK++D G + sR+ +         dy+ +    + k ++P+rW+AP
    KIAA1079   297 SDLNVKVGDYGIgfSRYKE---------DYIET----DDKKVFPLRWTAP 333  

                   Esl..........kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfm
                   E  ++ +++  + +  k++    +WS GV+LWE+f + +qPY++     +
    KIAA1079   334 ELVtsfqdrlltaDQTKYSN---IWSLGVTLWELFDNAAQPYSN-----L 375  

                   sneevleylkkGyRlpkPendl..piSsvtCPdelYdlMlqCWaedPedR
                   sn +vl+++ + +  + P+  l++p      +d  Y++ + CW   Pe+R
    KIAA1079   376 SNLDVLNQVIRERDTKLPKPQLeqP-----YSDRWYEVLQFCWLS-PEKR 419  

                   PtFselverl<-*
                   P  ++++++l   
    KIAA1079   420 PAAEDVHRLL    429  

SM00220: domain 1 of 1, from 159 to 432: score 64.2, E = 1.6e-14
                   *->YellkklGkGaFGkVylardkk..tgrlvAiKvik.erilrEikiLk
                         ++++G G FGkV l+    +++  +v +K++k     +E +   
    KIAA1079   159    LNYIQEIGNGWFGKVLLGEIYTgtSVARVIVKELKaSANPKEQDTFL 205  

                   k........dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                   k++++    +HPNI ++ + +++   + lV+E+c+   GdL+ +l++ + 
    KIAA1079   206 KngepyyilQHPNILQCVGQCVEaIPYLLVFEFCDL--GDLKAYLRSEQE 253  

                   rglrkvlsEearfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                   + ++   +   ++++++++ +L+ +H+++++H DL   N +L+s+ +vK+
    KIAA1079   254 HMRGDSQTMLLQRMACEVAAGLAAMHKLHFLHSDLALRNCFLTSdlNVKV 303  

                   aDF..GlArql.......ttfvGTpeYmAPEvl.............gYgk
                   +D + G++r  ++  ++++  v  + + APE++++ +++  + ++++Y+ 
    KIAA1079   304 GDYgiGFSRYKedyietdDKKVFPLRWTAPELVtsfqdrlltadqtKYSN 353  

                   pavDiWSlGcilyEllt.GkpPFp...qldlifkkig.............
                       iWSlG++l+El+ +   P+++ ++ld++ ++i++++++ +++  + 
    KIAA1079   354 ----IWSLGVTLWELFDnAAQPYSnlsNLDVLNQVIRerdtklpkpqleq 399  

                   ..SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   ++S+   + ++ ++   PekR+ a+++ +      +  ++   
    KIAA1079   400 pySDRWYEVLQFCWL-SPEKRPAAeDVHR------LLTYL    432  

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