hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16404864/chunk_1/iprscan-20080501-16404864.nocrc
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Query sequence: KIAA1075
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00462                                                 109.1    5.1e-28   1
SM00252                                                  68.7    7.5e-16   1
SM00109                                                  50.1    2.9e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00109    1/1     128   175 ..     1    61 []    50.1  2.9e-10
SM00252    1/1    1234  1334 ..     1    87 []    68.7  7.5e-16
SM00462    1/1    1367  1505 .]     1   156 []   109.1  5.1e-28

Alignments of top-scoring domains:
SM00109: domain 1 of 1, from 128 to 175: score 50.1, E = 2.9e-10
                   *->Hkfvfrtf..kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkk
                      H+f+++ f++kp  C+vC+ +i g         g++C++Ckv+ H k
    KIAA1075   128    HSFREKVFrkKPPVCAVCKVTIDGT--------GVSCRVCKVATHRK 166  

                   CaekvpaqshksglsC<-*
                   C +kv++       +C   
    KIAA1075   167 CEAKVTS-------AC    175  

SM00252: domain 1 of 1, from 1234 to 1334: score 68.7, E = 7.5e-16
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvk.
                        WY  ++sR++A +lLk   + +G+FL+RdS s+ g+y L ++v +
    KIAA1075  1234    KFWYKPHLSRDQAIALLKD--KDPGAFLIRDSHSFQGAYGLALKVAt 1278 

                   ..............gkvkHyrIrrtddgkfylggt.prrkFpsL.eLveh
                   ++++ ++ ++++ ++ v+H++I++ + +++ + g++++++F sL+ Lv  
    KIAA1075  1279 pppsaqpwkgdpveQLVRHFLIETGP-KGVKIKGCpSEPYFGSLsALVSQ 1327 

                   Yqknslg<-*
                   ++  +++   
    KIAA1075  1328 HSISPIS    1334 

SM00462: domain 1 of 1, from 1367 to 1505: score 109.1, E = 5.1e-28
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr..sekkk
                       +g++++V+YL sve+++ +       g+q++++a +   + s +++
    KIAA1075  1367    RQGAACSVLYLTSVETESLT-------GPQAVARASSAALscSPRPT 1406 

                   pqkvilsvSsdgvklidektk.qvlaehplrrIsfcaadpq.r.w.nt.G
                   p  v+++vS +g++l+d+++k ++++++p+++I+f++ dpq+r+w+n++G
    KIAA1075  1407 PAVVHFKVSAQGITLTDNQRKlFFRRHYPVNSITFSSTDPQdRrWtNPdG 1456 

                   gdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaig
                   +     ++++Fg++a++pgs       +++ CH+F   ++    +++ ++
    KIAA1075  1457 T-----TSKIFGFVAKKPGS------PWENVCHLFAELDPD---QPAGAI 1492 

                   qaFqvayelklkarse<-*
                     F +++ l +++      
    KIAA1075  1493 VTFITKVLLGQRK---    1505 

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