hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16291892/chunk_1/iprscan-20080501-16291892.nocrc
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Query sequence: KIAA1068
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04969.6.fs CS domain                                       85.9    1.2e-24   1
PF04969.6.ls CS domain                                       87.8      3e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04969.6.fs   1/1     181   260 ..     1    83 []    85.9  1.2e-24
PF04969.6.ls   1/1     181   260 ..     1    83 []    87.8    3e-23

Alignments of top-scoring domains:
PF04969.6.fs: domain 1 of 1, from 181 to 260: score 85.9, E = 1.2e-24
                   *->prydWyQtldeVtitiplkgvfpikkkdvkVeikpkslkvsikgpgg
                      ++y+W+Q  +++++++p+++  ++k+k+v+V ++++s++v +  ++g
    KIAA1068   181    ENYTWSQDYTDLEVRVPVPKH-VVKGKQVSVALSSSSIRVAMLEENG 226  

                   dkpylldgepLfgpIdpeeSswkiedtkkveItLkK<-*
                    +++l++g+ L ++I++e S w++e++k+v + L K   
    KIAA1068   227 -ERVLMEGK-LTHKINTESSLWSLEPGKCVLVNLSK    260  

PF04969.6.ls: domain 1 of 1, from 181 to 260: score 87.8, E = 3e-23
                   *->prydWyQtldeVtitiplkgvfpikkkdvkVeikpkslkvsikgpgg
                      ++y+W+Q  +++++++p+++  ++k+k+v+V ++++s++v +  ++g
    KIAA1068   181    ENYTWSQDYTDLEVRVPVPKH-VVKGKQVSVALSSSSIRVAMLEENG 226  

                   dkpylldgepLfgpIdpeeSswkiedtkkveItLkK<-*
                    +++l++g+ L ++I++e S w++e++k+v + L K   
    KIAA1068   227 -ERVLMEGK-LTHKINTESSLWSLEPGKCVLVNLSK    260  

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