# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hj05437.fasta.nr -Q ../query/KIAA1068.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1068, 354 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826129 sequences Expectation_n fit: rho(ln(x))= 5.8222+/-0.000191; mu= 7.8316+/- 0.011 mean_var=92.4893+/-18.923, 0's: 30 Z-trim: 35 B-trim: 6471 in 2/65 Lambda= 0.133361 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|145559509|sp|Q8IVD9.3|NUDC3_HUMAN RecName: Full ( 361) 2363 464.3 1.7e-128 gi|23273927|gb|AAH35014.1| NudC domain containing ( 361) 2348 461.4 1.2e-127 gi|90110782|sp|Q5RB75.1|NUDC3_PONAB RecName: Full= ( 361) 2334 458.8 8e-127 gi|109066663|ref|XP_001092225.1| PREDICTED: NudC d ( 364) 2318 455.7 6.8e-126 gi|149047664|gb|EDM00334.1| rCG35703, isoform CRA_ ( 363) 2142 421.8 1.1e-115 gi|78100747|sp|Q8R1N4.3|NUDC3_MOUSE RecName: Full= ( 363) 2101 413.9 2.5e-113 gi|89994047|gb|AAI14137.1| NudC domain containing ( 359) 2068 407.6 2e-111 gi|194209528|ref|XP_001495826.2| PREDICTED: simila ( 398) 1998 394.1 2.5e-107 gi|211826085|gb|AAH11673.2| NUDCD3 protein [Homo s ( 296) 1972 389.0 6.3e-106 gi|126302969|ref|XP_001370227.1| PREDICTED: simila ( 364) 1936 382.2 9e-104 gi|119581504|gb|EAW61100.1| NudC domain containing ( 290) 1927 380.4 2.5e-103 gi|34784256|gb|AAH57603.1| Nudcd3 protein [Mus mus ( 291) 1658 328.6 9.6e-88 gi|10436552|dbj|BAB14855.1| unnamed protein produc ( 256) 1479 294.1 2e-77 gi|90079665|dbj|BAE89512.1| unnamed protein produc ( 220) 1473 292.9 4e-77 gi|81294290|gb|AAI07926.1| Nudcd3 protein [Rattus ( 299) 1472 292.8 5.8e-77 gi|26337913|dbj|BAC32642.1| unnamed protein produc ( 300) 1432 285.1 1.2e-74 gi|148708628|gb|EDL40575.1| NudC domain containing ( 313) 1432 285.2 1.2e-74 gi|74010953|ref|XP_850094.1| PREDICTED: similar to ( 199) 1237 247.5 1.7e-63 gi|49257406|gb|AAH73360.1| MGC80778 protein [Xenop ( 346) 1144 229.8 6.5e-58 gi|59808725|gb|AAH89719.1| MGC108341 protein [Xeno ( 346) 1124 225.9 9.3e-57 gi|120538431|gb|AAI29582.1| LOC100036878 protein [ ( 347) 1096 220.5 3.9e-55 gi|47228546|emb|CAG05366.1| unnamed protein produc ( 353) 1026 207.1 4.5e-51 gi|125828613|ref|XP_690667.2| PREDICTED: hypotheti ( 344) 970 196.3 7.7e-48 gi|41946864|gb|AAH65992.1| Zgc:77067 [Danio rerio] ( 344) 963 195.0 2e-47 gi|210129222|gb|EEA76897.1| hypothetical protein B ( 364) 938 190.2 5.7e-46 gi|198413868|ref|XP_002128027.1| PREDICTED: simila ( 326) 752 154.3 3.1e-35 gi|159163336|pdb|1WGV|A Chain A, Solution Structur ( 124) 738 151.3 9.5e-35 gi|74012561|ref|XP_853000.1| PREDICTED: similar to ( 164) 731 150.1 3e-34 gi|123245877|emb|CAM19835.1| NudC domain containin ( 112) 675 139.2 3.9e-31 gi|210083698|gb|EEA32282.1| hypothetical protein B ( 344) 677 139.9 7.2e-31 gi|56205673|emb|CAI24961.1| NudC domain containing ( 251) 675 139.4 7.3e-31 gi|149047665|gb|EDM00335.1| rCG35703, isoform CRA_ ( 315) 675 139.5 8.7e-31 gi|26341230|dbj|BAC34277.1| unnamed protein produc ( 315) 675 139.5 8.7e-31 gi|118113655|ref|XP_001233318.1| PREDICTED: simila ( 99) 627 129.9 2.1e-28 gi|221117580|ref|XP_002160902.1| PREDICTED: simila ( 300) 570 119.3 1e-24 gi|156217078|gb|EDO38002.1| predicted protein [Nem ( 182) 535 112.4 7.3e-23 gi|198414206|ref|XP_002119243.1| PREDICTED: simila ( 719) 523 110.5 1.1e-21 gi|215505165|gb|EEC14659.1| nuclear distribution p ( 370) 512 108.2 2.7e-21 gi|89297339|gb|EAR95327.1| Nuclear movement protei (1380) 496 105.6 6.4e-20 gi|211964906|gb|EEB00102.1| nuclear movement domai ( 384) 482 102.4 1.5e-19 gi|221484864|gb|EEE23154.1| nuclear movement domai ( 384) 479 101.9 2.3e-19 gi|221506082|gb|EEE31717.1| nuclear movement domai ( 384) 475 101.1 3.9e-19 gi|56758148|gb|AAW27214.1| SJCHGC02542 protein [Sc ( 334) 452 96.6 7.5e-18 gi|124392199|emb|CAK57733.1| unnamed protein produ ( 329) 446 95.5 1.7e-17 gi|156549630|ref|XP_001604092.1| PREDICTED: simila ( 300) 444 95.1 2e-17 gi|68125259|emb|CAJ02837.1| hypothetical protein, ( 328) 434 93.2 8.2e-17 gi|134068320|emb|CAM66606.1| hypothetical protein, ( 322) 424 91.2 3.1e-16 gi|134060354|emb|CAM37515.1| hypothetical protein, ( 327) 418 90.1 6.9e-16 gi|156207432|gb|EDO29367.1| predicted protein [Nem ( 159) 411 88.5 1e-15 gi|167866324|gb|EDS29707.1| nuclear movement prote ( 334) 413 89.1 1.4e-15 >>gi|145559509|sp|Q8IVD9.3|NUDC3_HUMAN RecName: Full=Nud (361 aa) initn: 2363 init1: 2363 opt: 2363 Z-score: 2463.3 bits: 464.3 E(): 1.7e-128 Smith-Waterman score: 2363; 100.000% identity (100.000% similar) in 354 aa overlap (1-354:8-361) 10 20 30 40 50 KIAA10 LYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 METGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA 10 20 30 40 50 60 60 70 80 90 100 110 KIAA10 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 70 80 90 100 110 120 120 130 140 150 160 170 KIAA10 TTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 TTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPD 130 140 150 160 170 180 180 190 200 210 220 230 KIAA10 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA10 KLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 KLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEE 250 260 270 280 290 300 300 310 320 330 340 350 KIAA10 EQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 EQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQ 310 320 330 340 350 360 KIAA10 F : gi|145 F >>gi|23273927|gb|AAH35014.1| NudC domain containing 3 [H (361 aa) initn: 2348 init1: 2348 opt: 2348 Z-score: 2447.7 bits: 461.4 E(): 1.2e-127 Smith-Waterman score: 2348; 99.435% identity (99.718% similar) in 354 aa overlap (1-354:8-361) 10 20 30 40 50 KIAA10 LYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA 10 20 30 40 50 60 60 70 80 90 100 110 KIAA10 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 70 80 90 100 110 120 120 130 140 150 160 170 KIAA10 TTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 TTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPD 130 140 150 160 170 180 180 190 200 210 220 230 KIAA10 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEG ::::::::::::::::::::::::.::::::::::::::::::::::::::::: ::::: gi|232 SYNGAVRENYTWSQDYTDLEVRVPLPKHVVKGKQVSVALSSSSIRVAMLEENGECVLMEG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA10 KLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 KLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEE 250 260 270 280 290 300 300 310 320 330 340 350 KIAA10 EQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 EQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQ 310 320 330 340 350 360 KIAA10 F : gi|232 F >>gi|90110782|sp|Q5RB75.1|NUDC3_PONAB RecName: Full=NudC (361 aa) initn: 2334 init1: 2334 opt: 2334 Z-score: 2433.1 bits: 458.8 E(): 8e-127 Smith-Waterman score: 2334; 98.870% identity (99.435% similar) in 354 aa overlap (1-354:8-361) 10 20 30 40 50 KIAA10 LYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA 10 20 30 40 50 60 60 70 80 90 100 110 KIAA10 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 70 80 90 100 110 120 120 130 140 150 160 170 KIAA10 TTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPD :::: :.::::::::::::::::::: :::::::::::::::::::.::::::::::::: gi|901 TTELGGRQEVEKVQPPGPVKEMAHGSLEAEAPGAVAGAAEVPREPPVLPRIQEQFQKNPD 130 140 150 160 170 180 180 190 200 210 220 230 KIAA10 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA10 KLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 KLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEE 250 260 270 280 290 300 300 310 320 330 340 350 KIAA10 EQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 EQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQ 310 320 330 340 350 360 KIAA10 F : gi|901 F >>gi|109066663|ref|XP_001092225.1| PREDICTED: NudC domai (364 aa) initn: 1508 init1: 1508 opt: 2318 Z-score: 2416.4 bits: 455.7 E(): 6.8e-126 Smith-Waterman score: 2318; 98.039% identity (98.599% similar) in 357 aa overlap (1-354:8-364) 10 20 30 40 50 KIAA10 LYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA 10 20 30 40 50 60 60 70 80 90 100 110 KIAA10 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 70 80 90 100 110 120 120 130 140 150 160 170 KIAA10 TTELDGHQEVEKVQPPGP---VKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQK :::: :.::.:::::::: :::::::::::::::::::::::::::: :::::::::: gi|109 TTELGGRQELEKVQPPGPQDPVKEMAHGSQEAEAPGAVAGAAEVPREPPALPRIQEQFQK 130 140 150 160 170 180 180 190 200 210 220 230 KIAA10 NPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVL 190 200 210 220 230 240 240 250 260 270 280 290 KIAA10 MEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA10 DEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPG 310 320 330 340 350 360 KIAA10 AVQF :::: gi|109 AVQF >>gi|149047664|gb|EDM00334.1| rCG35703, isoform CRA_a [R (363 aa) initn: 2043 init1: 1439 opt: 2142 Z-score: 2233.4 bits: 421.8 E(): 1.1e-115 Smith-Waterman score: 2142; 89.356% identity (96.919% similar) in 357 aa overlap (1-354:8-363) 10 20 30 40 50 KIAA10 LYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA ::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|149 MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPTDRMGFPPGAAQA 10 20 30 40 50 60 60 70 80 90 100 110 KIAA10 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS ::::::::::::::::::::..:::::::.:::: ::.:.::.:::: :::::::.:::. gi|149 LVLQVFKTFDHMARQDDEKRKKELEEKIRKKEEE-AKAVAAATAEKEAVPVPVQEVEIDA 70 80 90 100 110 120 130 140 150 160 170 KIAA10 TTELDGHQEVEKVQ---PPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQK :: :.: .:::: . : :: ....:::.::::::....::: :..::.:::::::::: gi|149 TTALSGPREVEKEELPGPQGPERKVTHGSEEAEAPGTASSAAEGPKDPPVLPRIQEQFQK 120 130 140 150 160 170 180 190 200 210 220 230 KIAA10 NPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVL ::::::::.:::::::::::::::::::::::::::::::::::.::::::::::::::: gi|149 NPDSYNGAIRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSGSIRVAMLEENGERVL 180 190 200 210 220 230 240 250 260 270 280 290 KIAA10 MEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATV ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|149 MEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWSAILEGEEPIDIDKINKERSMATV 240 250 260 270 280 290 300 310 320 330 340 350 KIAA10 DEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPG 300 310 320 330 340 350 KIAA10 AVQF :::: gi|149 AVQF 360 >>gi|78100747|sp|Q8R1N4.3|NUDC3_MOUSE RecName: Full=NudC (363 aa) initn: 2001 init1: 1389 opt: 2101 Z-score: 2190.8 bits: 413.9 E(): 2.5e-113 Smith-Waterman score: 2101; 87.115% identity (95.798% similar) in 357 aa overlap (1-354:8-363) 10 20 30 40 50 KIAA10 LYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|781 MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA 10 20 30 40 50 60 60 70 80 90 100 110 KIAA10 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS ::::::::::::::::::::..:::::::.:::: ::.. :: .:: :::::::.:::. gi|781 LVLQVFKTFDHMARQDDEKRKKELEEKIRKKEEE-AKALPAAETEKVAVPVPVQEVEIDA 70 80 90 100 110 120 130 140 150 160 170 KIAA10 TTELDGHQEVEKVQPPG---PVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQK ...:.: ::::: .::: : . ..:: ..:::::.:..::: :..::.:::::::::: gi|781 AADLSGPQEVEKEEPPGSQDPEHTVTHGLEKAEAPGTVSSAAEGPKDPPVLPRIQEQFQK 120 130 140 150 160 170 180 190 200 210 220 230 KIAA10 NPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVL ::::::::.:::: ::::::::::::::::::.:::::::::::..:::::.:::::::: gi|781 NPDSYNGAIRENYIWSQDYTDLEVRVPVPKHVMKGKQVSVALSSGTIRVAMVEENGERVL 180 190 200 210 220 230 240 250 260 270 280 290 KIAA10 MEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATV :::::::::::::::::::::.::::::::::::::.::::::::::::::::::::::: gi|781 MEGKLTHKINTESSLWSLEPGRCVLVNLSKVGEYWWSAILEGEEPIDIDKINKERSMATV 240 250 260 270 280 290 300 310 320 330 340 350 KIAA10 DEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|781 DEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPG 300 310 320 330 340 350 KIAA10 AVQF :::: gi|781 AVQF 360 >>gi|89994047|gb|AAI14137.1| NudC domain containing 3 [B (359 aa) initn: 1409 init1: 1409 opt: 2068 Z-score: 2156.6 bits: 407.6 E(): 2e-111 Smith-Waterman score: 2068; 87.395% identity (94.398% similar) in 357 aa overlap (1-354:8-359) 10 20 30 40 50 KIAA10 LYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|899 MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA 10 20 30 40 50 60 60 70 80 90 100 110 KIAA10 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS :::::::::::::::::::::.:::::::::::::: .:.::.::.::::.::::.:.:: gi|899 LVLQVFKTFDHMARQDDEKRRKELEEKIRRKEEEEATAVAAATAEQEPVPAPVQEVEVDS 70 80 90 100 110 120 120 130 140 150 160 170 KIAA10 TTELDGHQEVEKVQPPGP---VKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQK ::. : :: :::: ..:.: .: ::::::: :::::.:::: ::. :::::. gi|899 TTDSGGPQE-----PPGPRGTLQEVAVSSGEAEAPGADAGAAEAPREPLALPKRQEQFQR 130 140 150 160 170 180 190 200 210 220 230 KIAA10 NPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVL :::::::::::::::::::::::..:::::::::::::::.:::::::::.:: :::::: gi|899 NPDSYNGAVRENYTWSQDYTDLELKVPVPKHVVKGKQVSVTLSSSSIRVAVLEGNGERVL 180 190 200 210 220 230 240 250 260 270 280 290 KIAA10 MEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATV ::::.:::::::::::::::::::::.:.:::::::.::::::: ::::::::::::::: gi|899 MEGKFTHKINTESSLWSLEPGKCVLVSLNKVGEYWWSAILEGEEQIDIDKINKERSMATV 240 250 260 270 280 290 300 310 320 330 340 350 KIAA10 DEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPG ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|899 DEEEHAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPG 300 310 320 330 340 350 KIAA10 AVQF :::: gi|899 AVQF >>gi|194209528|ref|XP_001495826.2| PREDICTED: similar to (398 aa) initn: 1960 init1: 1960 opt: 1998 Z-score: 2083.2 bits: 394.1 E(): 2.5e-107 Smith-Waterman score: 1998; 85.352% identity (93.521% similar) in 355 aa overlap (5-354:49-398) 10 20 30 KIAA10 LYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFY :::::::::::::::::::::::::::::: gi|194 LSAKPPECSSAQPVGVTEAARDRKSRERAAALLGILQHVGNVQDFLRVLFGFLYRKTDFY 20 30 40 50 60 70 40 50 60 70 80 90 KIAA10 RLLRHPSDRMGFPPGAAQALVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSA ::::::::::::::::::::::::::::: ::::::::::.:::::::::::::: .:.: gi|194 RLLRHPSDRMGFPPGAAQALVLQVFKTFDLMARQDDEKRRKELEEKIRRKEEEEAMAVAA 80 90 100 110 120 130 100 110 120 130 140 KIAA10 AAAEKEPVPVPV--QEIEIDSTTELDGHQEVEKVQPPGP---VKEMAHGSQEAEAPGAVA ::::.::.:.:. ::.::::::. : : :::: :.:.:.::..:: ::: : gi|194 AAAEQEPAPAPAPAQEVEIDSTTDSGGPQ-----GPPGPQGAVQEVAQGSRKAELPGADA 140 150 160 170 180 190 150 160 170 180 190 200 KIAA10 GAAEVPREPPILPRIQEQFQKNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVS :::.::::: ::. :::::.:::::::::::::::::::::::..::::::::::.::: gi|194 GAAQVPREPTALPKRQEQFQRNPDSYNGAVRENYTWSQDYTDLELKVPVPKHVVKGRQVS 200 210 220 230 240 250 210 220 230 240 250 260 KIAA10 VALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAI :::::::::::.:: .:::::::::.:::::::::::::::::::::.:::.:::::.:: gi|194 VALSSSSIRVAVLEGSGERVLMEGKFTHKINTESSLWSLEPGKCVLVSLSKAGEYWWSAI 260 270 280 290 300 310 270 280 290 300 310 320 KIAA10 LEGEEPIDIDKINKERSMATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWD ::::: ::::.::::::::::::::.:::::::::::::::::::::::::::::.:::: gi|194 LEGEEHIDIDQINKERSMATVDEEEHAVLDRLTFDYHQKLQGKPQSHELKVHEMLQKGWD 320 330 340 350 360 370 330 340 350 KIAA10 AEGSPFRGQRFDPAMFNISPGAVQF ::::::::::::::::::::::::: gi|194 AEGSPFRGQRFDPAMFNISPGAVQF 380 390 >>gi|211826085|gb|AAH11673.2| NUDCD3 protein [Homo sapie (296 aa) initn: 1972 init1: 1972 opt: 1972 Z-score: 2057.9 bits: 389.0 E(): 6.3e-106 Smith-Waterman score: 1972; 100.000% identity (100.000% similar) in 296 aa overlap (59-354:1-296) 30 40 50 60 70 80 KIAA10 RKTDFYRLLRHPSDRMGFPPGAAQALVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEE :::::::::::::::::::::::::::::: gi|211 FKTFDHMARQDDEKRRQELEEKIRRKEEEE 10 20 30 90 100 110 120 130 140 KIAA10 AKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|211 AKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAV 40 50 60 70 80 90 150 160 170 180 190 200 KIAA10 AGAAEVPREPPILPRIQEQFQKNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|211 AGAAEVPREPPILPRIQEQFQKNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQV 100 110 120 130 140 150 210 220 230 240 250 260 KIAA10 SVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|211 SVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNA 160 170 180 190 200 210 270 280 290 300 310 320 KIAA10 ILEGEEPIDIDKINKERSMATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|211 ILEGEEPIDIDKINKERSMATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGW 220 230 240 250 260 270 330 340 350 KIAA10 DAEGSPFRGQRFDPAMFNISPGAVQF :::::::::::::::::::::::::: gi|211 DAEGSPFRGQRFDPAMFNISPGAVQF 280 290 >>gi|126302969|ref|XP_001370227.1| PREDICTED: similar to (364 aa) initn: 1847 init1: 1267 opt: 1936 Z-score: 2019.2 bits: 382.2 E(): 9e-104 Smith-Waterman score: 1936; 80.992% identity (92.011% similar) in 363 aa overlap (1-354:8-364) 10 20 30 40 50 KIAA10 LYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA ::::::::::::::::::::::::::::::::::::::: .::::::::.::: gi|126 MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHSADRMGFPPGVAQA 10 20 30 40 50 60 60 70 80 90 100 110 KIAA10 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS .::::::.:..:::::::.::.:::::.::::::::.. :..::: ::.:.::.:::: gi|126 MVLQVFKNFEYMARQDDERRRKELEEKMRRKEEEEANV--AVTAEK--VPAPAQEVEIDS 70 80 90 100 110 120 130 140 150 160 KIAA10 TTELD------GHQEVEKVQPPGPV---KEMAHGSQEAEAPGAVAGAAEVPREPPILPRI ::: :::: ....:: : .: .:.:..:: : :.: .:.:: ::: ::. gi|126 TTECGAAAGAAGHQEKKRAKPPVPSGAEQEAGHSSRDAELP-AIA-VADVPVEPPALPKR 120 130 140 150 160 170 170 180 190 200 210 220 KIAA10 QEQFQKNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEE :::::::::::::::::::::::::.::::.:::::::.::::::: :::::::::.:: gi|126 QEQFQKNPDSYNGAVRENYTWSQDYSDLEVKVPVPKHVLKGKQVSVDLSSSSIRVAILEG 180 190 200 210 220 230 230 240 250 260 270 280 KIAA10 NGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKE ::::.:::::.::::::::::::::::::::.::.:::::::.::::::: ::::::::: gi|126 NGERILMEGKFTHKINTESSLWSLEPGKCVLINLNKVGEYWWSAILEGEEQIDIDKINKE 240 250 260 270 280 290 290 300 310 320 330 340 KIAA10 RSMATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAM ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::.: gi|126 RSMATVDEEEHAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPSM 300 310 320 330 340 350 350 KIAA10 FNISPGAVQF :::::::::: gi|126 FNISPGAVQF 360 354 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 16:57:42 2009 done: Tue Mar 3 17:02:54 2009 Total Scan time: 1457.400 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]