hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16241359/chunk_1/iprscan-20080501-16241359.nocrc
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Query sequence: KIAA1065
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00273                                                 234.2    1.1e-65   1
SM00726                                                  33.5    2.8e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00273    1/1      42   168 ..     1   137 []   234.2  1.1e-65
SM00726    1/2     299   318 ..     1    20 []    19.4     0.51
SM00726    2/2     324   343 ..     1    20 []    14.1       19

Alignments of top-scoring domains:
SM00273: domain 1 of 1, from 42 to 168: score 234.2, E = 1.1e-65
                   *->sdlevkVrkATnndewgpkgkhlreIlqgTsneklrssfaeimavlw
                      s++e+kVr+AT+nd+wgp+++++ eI+++T+n+   ++f eim+++w
    KIAA1065    42    SEAEIKVREATSNDPWGPSSSLMTEIADLTYNV---VAFSEIMSMVW 85   

                   rRLndkgknWrvvyKaLillhyLlrnGspfervvlealrnrnrIltLsdf
                   +RLnd+gknWr+vyKaL+ll+yL++ Gs  erv +++++n+  I+tL+df
    KIAA1065    86 KRLNDHGKNWRHVYKALTLLDYLIKTGS--ERVAQQCRENIFAIQTLKDF 133  

                   qdkvfndidsrgkDqGaniRtyakyLlelledderlkeer<-*
                   q+     id++gkDqG+n+R+++k+L++ll+d+erlk+er   
    KIAA1065   134 QY-----IDRDGKDQGINVREKSKQLVALLKDEERLKAER    168  

SM00726: domain 1 of 2, from 299 to 318: score 19.4, E = 0.51
                   *->dEdedLqlAlelSlqeaeee<-*
                      +E+ +LqlAl++S++ ae+e   
    KIAA1065   299    EEELQLQLALAMSREVAEQE    318  

SM00726: domain 2 of 2, from 324 to 343: score 14.1, E = 19
                   *->dEdedLqlAlelSlqeaeee<-*
                       +d  Lq+Ale+S+++  +    
    KIAA1065   324    GDDLRLQMALEESRRDTVKI    343  

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