hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16241359/chunk_1/iprscan-20080501-16241359.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1065
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01417.11.ls ENTH domain                                    286.4    5.2e-83   1
PF01417.11.fs ENTH domain                                    284.5    1.9e-82   1
PF02809.10.fs Ubiquitin interaction motif                     20.5    0.00036   1
PF02809.10.ls Ubiquitin interaction motif                     24.3     0.0004   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01417.11.fs   1/1      41   164 ..     1   140 []   284.5  1.9e-82
PF01417.11.ls   1/1      41   164 ..     1   140 []   286.4  5.2e-83
PF02809.10.fs   1/1     298   315 ..     1    18 []    20.5  0.00036
PF02809.10.ls   1/2     298   315 ..     1    18 []    22.5   0.0014

Alignments of top-scoring domains:
PF01417.11.fs: domain 1 of 1, from 41 to 164: score 284.5, E = 1.9e-82
                   *->yseaeikVreATnnDpwGPsgklmaeIaeaTyneklyvefeeimsvL
                      yseaeikVreAT+nDpwGPs++lm+eIa++Tyn   +v+f eims+ 
    KIAA1065    41    YSEAEIKVREATSNDPWGPSSSLMTEIADLTYN---VVAFSEIMSMV 84   

                   wkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfnI
                   wkRLn d +  gknWRhVYKaLtlL+YL+k+GSErv+++creni+    I
    KIAA1065    85 WKRLN-D-H--GKNWRHVYKALTLLDYLIKTGSERVAQQCRENIF---AI 127  

                   rtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-*
                   +tL+dFqy  iD++Gk    DqGinVR+K+k+l++LL+D+erL   
    KIAA1065   128 QTLKDFQY--IDRDGK----DQGINVREKSKQLVALLKDEERL    164  

PF01417.11.ls: domain 1 of 1, from 41 to 164: score 286.4, E = 5.2e-83
                   *->yseaeikVreATnnDpwGPsgklmaeIaeaTyneklyvefeeimsvL
                      yseaeikVreAT+nDpwGPs++lm+eIa++Tyn   +v+f eims+ 
    KIAA1065    41    YSEAEIKVREATSNDPWGPSSSLMTEIADLTYN---VVAFSEIMSMV 84   

                   wkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfnI
                   wkRLn d +  gknWRhVYKaLtlL+YL+k+GSErv+++creni+    I
    KIAA1065    85 WKRLN-D-H--GKNWRHVYKALTLLDYLIKTGSERVAQQCRENIF---AI 127  

                   rtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-*
                   +tL+dFqy  iD++Gk    DqGinVR+K+k+l++LL+D+erL   
    KIAA1065   128 QTLKDFQY--IDRDGK----DQGINVREKSKQLVALLKDEERL    164  

PF02809.10.fs: domain 1 of 1, from 298 to 315: score 20.5, E = 0.00036
                   *->mdEEedLqlALalSlqea<-*
                      ++EE +LqlALa+S++ a   
    KIAA1065   298    GEEELQLQLALAMSREVA    315  

PF02809.10.ls: domain 1 of 2, from 298 to 315: score 22.5, E = 0.0014
                   *->mdEEedLqlALalSlqea<-*
                      ++EE +LqlALa+S++ a   
    KIAA1065   298    GEEELQLQLALAMSREVA    315  

//