# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj05094.fasta.huge -Q ../query/KIAA1065.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1065, 665 aa vs ./tmplib.24314 library 1986840 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.7187+/-0.00934; mu= -11.6964+/- 0.632 mean_var=404.0454+/-97.067, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.063806 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0171 ( 655 res) ha02502 ( 655) 559 65.7 1.5e-11 >>KIAA0171 ( 655 res) ha02502 (655 aa) initn: 565 init1: 320 opt: 559 Z-score: 299.3 bits: 65.7 E(): 1.5e-11 Smith-Waterman score: 633; 27.634% identity (55.267% similar) in 655 aa overlap (36-659:46-625) 10 20 30 40 50 60 KIAA10 RTGRFLCLKGFKLITKKIKMTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMT :.: :::: : ::::::..::::::..:: KIAA01 GEQEREAADRPARGTMLNMWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMG 20 30 40 50 60 70 70 80 90 100 110 120 KIAA10 EIADLTYNVVAFSEIMSMVWKR-LNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENI ::: :. : :.:.:.:.: :.:. ::::.:::.: :: :::..:::::. . ::.: KIAA01 EIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHI 80 90 100 110 120 130 130 140 150 160 170 180 KIAA10 FAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATG . ...:......:. :::::::.:.: :.:: . .:..::. :: .: :.:.... : KIAA01 YDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYV----G 140 150 160 170 180 190 190 200 210 220 230 240 KIAA10 MGSNQITFGRGSSQPNLSTSHSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEEL ..:... :: : . .:: :. . .:: KIAA01 VSSDSV-----------------------GGFRYSERYDPE----PKSK------WDEEW 200 210 250 260 270 280 290 KIAA10 QPLSQRHPFLPHLGLASRPNGDWSQPCLT-CDRAARATSPRVSSELEQARPQTSG----- . .. :: .:: : :. . .. : : ::. :. .. . : KIAA01 DKNKSAFPFSDKLGELSDKIGSTIDDTISKFRRKDREDSPERCSDSDEEKKARRGRSPKG 220 230 240 250 260 270 300 310 320 330 340 350 KIAA10 ----EEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDT--VKIPKKKEHGSL ::: . ... . : .: . . : . . : : .. KIAA01 EFKDEEETVTTKHIHITQATETTTTRHKRTANPSKTIDLGAAAHYTGDKASPDQNASTHT 280 290 300 310 320 330 360 370 380 390 400 KIAA10 PQQTTLLDLMDALPSSGPAAQKAEPW-GPSASTNQTNP-WGGPA--APASTSDPWPSFGT ::.. . ..::: ... .. . : : ::. . .:: : . :..: .:: : KIAA01 PQSS----VKTSVPSSKSSGDLVDLFDGTSQSTGGSADLFGGFADFGSAAASGSFPSQVT 340 350 360 370 380 390 410 420 430 440 450 460 KIAA10 KPAASID--PWGVPTGATAQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSG ... : :.. . : . : .... .....::: . ...: : : ..:. KIAA01 ATSGNGDFGDWSAFNQAPSGPVASSGEFFGSASQPAVELVSGSQSALG-----PPPAASN 400 410 420 430 440 470 480 490 500 510 520 KIAA10 SFELFSNLNGTIKDDFSEFDNLRTSKKTAESV-TSLPSQNNGTTSPDPFESQPLTVASSK : .:: .: :. . .. ... : ....: .:: . .:: .. . KIAA01 SSDLF-DLMGSSQATMTSSQSMNFSMMSTNTVGLGLPMS----------RSQNTDMV--Q 450 460 470 480 490 530 540 550 560 570 580 KIAA10 PSSARKTPESFLGPNAALVNLDSLVT--RPAPPAQ-SLNPFLAPGAPATSAPVNPFQVNQ : .. : .. :.. ..::.:. .:. : : ::: .. : :. KIAA01 KSVSKTLPSTWSDPSVN-ISLDNLLPGMQPSKPQQPSLNTMIQ-------------QQNM 500 510 520 530 540 590 600 610 620 630 KIAA10 PQPLT-LNQLRGSPVLGTSTSFGP-GPGVESMAVASMTSAAPQPALGATGSSLTPLG--P ::.. ..: :. :.. ... : : .... . : . :. :. : ..::: : KIAA01 QQPMNVMTQSFGAVNLSSPSNMLPVRPQTNALIGGPMPMSMPNVMTGTMG--MAPLGNTP 550 560 570 580 590 600 640 650 660 KIAA10 ----AMMNMVGSVGIPPSAAQATGTTNPFLL .::.: ..:. .. ::: KIAA01 MMNQSMMGMNMNIGMSAAGMGLTGTMGMGMPNIAMTSGTVQPKQDAFANFANFSK 610 620 630 640 650 665 residues in 1 query sequences 1986840 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:46 2008 done: Thu Dec 18 15:07:46 2008 Total Scan time: 0.530 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]