hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16154686/chunk_1/iprscan-20080501-16154686.nocrc
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Query sequence: KIAA1060
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00044                                                 388.4   4.2e-112   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00044    1/2      31   239 ..     1   231 []   234.5  9.1e-66
SM00044    2/2     643   857 ..     1   231 []   153.9  1.6e-41

Alignments of top-scoring domains:
SM00044: domain 1 of 2, from 31 to 239: score 234.5, E = 9.1e-66
                   *->eekkktdrLLyqlLPasvAeslkegr..................epv
                       ek++ +rLL +lLPa++A+++k++  ++ ++++ ++ +++++ +  
    KIAA1060    31    FEKRQQERLLLSLLPAHIAMEMKAEIiqrlqgpkagqmentnnfHNL 77   

                   paesydsVTilFsDIvgFTslcsastPeqvvtlLndlysrFDriidrhgg
                   + +++ +V+il++DIvgFT+l+s ++P ++v +Ln+l+ +FD+i +++  
    KIAA1060    78 YVKRHTNVSILYADIVGFTRLASDCSPGELVHMLNELFGKFDQIAKENE- 126  

                   srvvvYKVeTiGDaYMVvsGlPeeaetsaesklkddglteawcfavqhae
                       +  ++ +GD+Y++vsGlP +                      +ha+
    KIAA1060   127 ----CMRIKILGDCYYCVSGLPISLP--------------------NHAK 152  

                   liadeaLdmveslktvkvphrkgelpgeglrvRiGiHtGpVvaGVvGlrm
                   +++ ++Ldm+e++k v +       +g ++++R+G+H+G V++GV+Gl +
    KIAA1060   153 NCVKMGLDMCEAIKKVRDA------TGVDINMRVGVHSGNVLCGVIGLQK 196  

                   pRYclFGdTVNlASRmEStgdpgqIqvSeetyslLqlgqaerrekggfef
                   + Y+++ ++V+lA+ mE+ g+pg++++S+ t ++L         +g + +
    KIAA1060   197 WQYDVWSHDVTLANHMEAGGVPGRVHISSVTLEHL---------NGAYKV 237  

                   ee<-*
                   ee   
    KIAA1060   238 EE    239  

SM00044: domain 2 of 2, from 643 to 857: score 153.9, E = 1.6e-41
                   *->eekkktdrLLyqlLPasvAeslkegr...epvpaesydsVTilFsDI
                       +++ +  LL ++LPa+vAe+  +   ++e+ +++syd+V ++F+ I
    KIAA1060   643    TMENLNRVLLENVLPAHVAEHFLARSlknEELYHQSYDCVCVMFASI 689  

                   vgFTslc....sastPeqvvtlLndlysrFDriidrhggsrv.vvYKVeT
                   ++F +++++++   + ++  +lLn++   FD+++++ +    + v+K++T
    KIAA1060   690 PDFKEFYtesdVNKEGLECLRLLNEIIADFDDLLSKPK---FsGVEKIKT 736  

                   iGDaYMVvsGlPeeaetsae.s.k.lkddglteawcfavqhaeliadeaL
                   iG +YM++ Gl  +    +e+s+ +++           + h+  ++++a+
    KIAA1060   737 IGSTYMAATGLSAVPS--QEhSqEpER----------QYMHIGTMVEFAF 774  

                   dmveslktvkvphrkgelpgeglrvRiGiHtGpVvaGVvGlrmpRYclFG
                     v  l+  ++ h+     ++++++R+Gi+ GpV aGV+G+ +p Y+++G
    KIAA1060   775 ALVGKLDA-INKHS-----FNDFKLRVGINHGPVIAGVIGAQKPQYDIWG 818  

                   dTVNlASRmEStgdpgqIqvSeetyslLqlgqaerrekggfefee<-*
                   +TVN+ASRm Stg+ ++Iqv+eet ++L      +   ++ ++ +   
    KIAA1060   819 NTVNVASRMDSTGVLDKIQVTEETSLVL------QTLGYTCTCRG    857  

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