hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16140712/chunk_1/iprscan-20080501-16140712.nocrc
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Query sequence: KIAA1059
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00602                                                1118.8          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00602    1/1     294   896 ..     1   735 []  1118.8        0

Alignments of top-scoring domains:
SM00602: domain 1 of 1, from 294 to 896: score 1118.8, E = 0
                   *->slllgsvkeSsvYiSeDyGkTfkkitdkggltGNrsveviselyisP
                      +++lgsv+eSs+++S+DyG+T++k++dk+gl+     +v+s+ly++P
    KIAA1059   294    DFNLGSVTESSLWRSTDYGTTYEKLNDKVGLK-----TVLSYLYVNP 335  

                   annskvilvtsvsgerksylfissDeGksfqkfklPfppeisPRllpllf
                   +n++k++l+++  +e++s+++issDeG+++qk++l+f+      +++llf
    KIAA1059   336 TNKRKIMLLSD--PEMESSILISSDEGATYQKYRLTFY------IQSLLF 377  

                   HPknpdyvLayskdncekeilsdkEENSGDEEGqFEiFNiteCrDklYvS
                   HPk++d+vLays d   +                           klY+S
    KIAA1059   378 HPKQEDWVLAYSLD---Q---------------------------KLYSS 397  

                   dDfGktWeeiqerveyceNSPiSiSDCGFawgvkdsgvsdeptlvyievk
                   +DfG++W++++er+++++          F+w+v+  g+++e +lv++ev+
    KIAA1059   398 MDFGRRWQLMHERITPNR----------FYWSVA--GLDKEADLVHMEVR 435  

                   ensgadefSSPYtsteLvssddffqSlrespfviledvygflltdeYlfv
                   +++g++++      t++++++ +++  r+ pf +++d+ +++++deY+f+
    KIAA1059   436 TTDGYAHY-----LTCRIQECAETT--RSGPFARSIDISSLVVQDEYIFI 478  

                   avtdeeygkDttslklyVSvnrseFamakfPkyhlvkkqdaytIldsded
                   +vt+      +++ ++yVS++r+ Fa++k+Pky+l+k   +++I+++de+
    KIAA1059   479 QVTT------SGRASYYVSYRREAFAQIKLPKYSLPK---DMHIISTDEN 519  

                   svFvhVsennqdgndDKGitgnLyiSdsrGtkFslsleNvnrytgGGAGs
                   +vF++V+e+nq  nd    t+nLyiSd+rG++F+l++eN+++++g     
    KIAA1059   520 QVFAAVQEWNQ--ND----TYNLYISDTRGIYFTLAMENIKSSRG----- 558  

                   DtlvRyfennvyvDFykVeGlkGiyiAnlvsnseeveenkedkklqTvIT
                         +++n+++++y+V+G+kGi++An++++  +        +++T+IT
    KIAA1059   559 ------LMGNIIIELYEVAGIKGIFLANKKVD--D--------QVKTYIT 592  

                   FDkGgdWslLraPesdsngkkfnCdlksednCSLHLhlytsqleNpynsg
                   ++kG+dW+lL+aP+ d++g++++C+l++   CSLHLhl++s  eNpy+sg
    KIAA1059   593 YNKGRDWRLLQAPDVDLRGSPVHCLLPF---CSLHLHLQLS--ENPYSSG 637  

                   mdilSkksApGliiAtGsVGDdsLlsyeepsvFISsDgGetWreifdgpH
                   + i Sk++ApGl++AtG++G ++L+++ ++ vFISsDgG+tWr+ifd+++
    KIAA1059   638 R-ISSKETAPGLVVATGNIG-PELSYT-DIGVFISSDGGNTWRQIFDEEY 684  

                   lyaylDhGGiiVAiehnsDEDDdptnelkYStDeGkTWktYtFtetpvfv
                   ++++lD+GG +VA++h++    +p+++l+ S+DeG++W++Y Ft+ p+fv
    KIAA1059   685 NVWFLDWGGALVAMKHTP----LPVRHLWVSFDEGHSWDKYGFTSVPLFV 730  

                   kgllTePgestliftlFGstkereqsswslytvDfkdifNerqCeedDye
                   +g l e+g++t+i+t+FG+++ r  s+w+l++vD+k+if  r+C+++Dy+
    KIAA1059   731 DGALVEAGMETHIMTVFGHFSLR--SEWQLVKVDYKSIF-SRHCTKEDYQ 777  

                   sWelddekWvyspqGskdgCllGkKeiFkRrkptsvClngrsdydlalvs
                   +W+l +       qG  + C++G+++iFk+rkp ++C  gr d+ +++vs
    KIAA1059   778 TWHLLN-------QG--EPCVMGERKIFKKRKPGAQCALGR-DHSGSVVS 817  

                   saCeKCTreDFECDfgFkrssdGtslevCvpdpelfsanpldppkkcsdg
                   ++C+ C+++DFECD+g++r+ +++    Cvp+   f++np++p+k+cs+g
    KIAA1059   818 EPCV-CANWDFECDYGYERHGESQ----CVPA---FWYNPASPSKDCSLG 859  

                   qeylqstGYRKipgdkCeGGdvkldlegepkkCPgkee<-*
                   q+yl+stGYR+i++++C++G ++++++++ ++CPgk++   
    KIAA1059   860 QSYLNSTGYRRIVSNNCTDG-LREKYTAKAQMCPGKAP    896  

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