hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16140712/chunk_1/iprscan-20080501-16140712.nocrc
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Query sequence: KIAA1059
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00801.10.fs PKD domain                                      56.6    1.1e-15   2
PF00801.10.ls PKD domain                                      58.0    2.9e-14   2
PF02012.10.ls BNR/Asp-box repeat                              53.1    8.5e-13   6
PF02012.10.fs BNR/Asp-box repeat                              41.1    3.2e-11   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02012.10.ls   1/6     306   317 ..     1    12 []    10.5      4.8
PF02012.10.ls   2/6     354   365 ..     1    12 []     7.4       12
PF02012.10.ls   3/6     395   406 ..     1    12 []     4.1       33
PF02012.10.ls   4/6     590   601 ..     1    12 []     4.2       32
PF02012.10.ls   5/6     667   678 ..     1    12 []    15.1     0.24
PF02012.10.ls   6/6     709   720 ..     1    12 []    11.9      2.2
PF00801.10.fs   1/2     901   985 ..     1    92 []    44.7  2.8e-12
PF00801.10.ls   1/2     901   985 ..     1    92 []    46.6  7.9e-11

Alignments of top-scoring domains:
PF02012.10.ls: domain 1 of 6, from 306 to 317: score 10.5, E = 4.8
                   *->yyStDgGkTWsk<-*
                      ++StD+G T +k   
    KIAA1059   306    WRSTDYGTTYEK    317  

PF02012.10.ls: domain 2 of 6, from 354 to 365: score 7.4, E = 12
                   *->yyStDgGkTWsk<-*
                       +S D G+T +k   
    KIAA1059   354    LISSDEGATYQK    365  

PF02012.10.ls: domain 3 of 6, from 395 to 406: score 4.1, E = 33
                   *->yyStDgGkTWsk<-*
                      y S D+G+ W++   
    KIAA1059   395    YSSMDFGRRWQL    406  

PF02012.10.ls: domain 4 of 6, from 590 to 601: score 4.2, E = 32
                   *->yyStDgGkTWsk<-*
                      y++++ G+ W +   
    KIAA1059   590    YITYNKGRDWRL    601  

PF02012.10.ls: domain 5 of 6, from 667 to 678: score 15.1, E = 0.24
                   *->yyStDgGkTWsk<-*
                      ++S DgG TW     
    KIAA1059   667    FISSDGGNTWRQ    678  

PF02012.10.ls: domain 6 of 6, from 709 to 720: score 11.9, E = 2.2
                   *->yyStDgGkTWsk<-*
                      ++S+D G +W k   
    KIAA1059   709    WVSFDEGHSWDK    720  

PF00801.10.fs: domain 1 of 2, from 901 to 985: score 44.7, E = 2.8e-12
                   *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGD...g
                      v+ +   +g+ v+++g+++tF +++   +d    ++ + dFGD+  +
    KIAA1059   901    VVTT---DGRLVAEQGHNATFIILM-EEGD-LQRTNIQLDFGDgiaV 942  

                   gstgltstepnvtHtYskgsVtpGtYtVtLtvsNgvgsasattttvtV<-
                   +    +  e ++ H+Y++    +G ++Vt  ++N+ gs++a  +++ V  
    KIAA1059   943 SYANFSPIEDGIKHVYKS----AGIFQVTAYAENNLGSDTAV-LFLHV   985  

                   *
                    
    KIAA1059     -   -    

PF00801.10.ls: domain 1 of 2, from 901 to 985: score 46.6, E = 7.9e-11
                   *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGD...g
                      v+ +   +g+ v+++g+++tF +++   +d    ++ + dFGD+  +
    KIAA1059   901    VVTT---DGRLVAEQGHNATFIILM-EEGD-LQRTNIQLDFGDgiaV 942  

                   gstgltstepnvtHtYskgsVtpGtYtVtLtvsNgvgsasattttvtV<-
                   +    +  e ++ H+Y++    +G ++Vt  ++N+ gs++a  +++ V  
    KIAA1059   943 SYANFSPIEDGIKHVYKS----AGIFQVTAYAENNLGSDTAV-LFLHV   985  

                   *
                    
    KIAA1059     -   -    

//