hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16104117/chunk_1/iprscan-20080501-16104117.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1057 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 191.5 1.5e-61 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 193.2 5.6e-55 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00443.19.fs 1/1 43 396 .. 1 318 [] 191.5 1.5e-61 PF00443.19.ls 1/1 43 396 .. 1 318 [] 193.2 5.6e-55 Alignments of top-scoring domains: PF00443.19.fs: domain 1 of 1, from 43 to 396: score 191.5, E = 1.5e-61 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl g++GL+N G+TCYmN+v Q L++ p l + +ls ++++ KIAA1057 43 SGFVGLRNGGATCYMNAVFQQLYMQPGLPESLLSVDDDTDN------ 83 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++ s+ ++ + Lf +l ++ ++ +p+ ++ ++++++n+e+ + KIAA1057 84 -PDDSVFYQVQSLFGHLMESkLQYYVPENFW------KIFKMWNKELYVR 126 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt QQDA EF+++L+d+++e+l++ KIAA1057 127 EQQDAYEFFTSLIDQMDEYLKK---------------------------M 149 RF xxxxxxxxxxxxxxxx rnesiitdlFqGqlks.................................. + i ++ FqG++ +++ +++++++ ++++ + + +++++ + + KIAA1057 150 GRDQIFKNTFQGIYSDqkickdcphryereeafmalnlgvtscqsleisl 199 RF xxxxxxxxxxxxxxxxxxxxxx ............................klkikrLPpvLiihLKRFsyng ++ +++ ++++ ++++++++ + ++ ik+LP vL+ihL+RF +++ KIAA1057 200 dqfvrgevlegsnayycekckekritvkRTCIKSLPSVLVIHLMRFGFDW 249 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx etglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeerqr. e g+++K d ++ fP L++ +y +++ rq++ KIAA1057 250 ESGRSIKYDEQIRFPWMLNMEPYTVSG-----------------MARQDs 282 RF xxxxxxxxxxxxxxxxxxxxxxxx ..........................dedgnneeepeeeedneegenppt +++ ++++++ +++++++++++ +++ KIAA1057 283 ssevgengrsvdqggggsprkkvaltEN---------------------- 310 RF xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx kYeLyaVvvHsGsslssGHYiayikk..kkengkWykfDDekVsevteee YeL++V+vHsG +++ GHY+++ik+++ ++gkWykf+D+ ++e + + KIAA1057 311 -YELVGVIVHSG-QAHAGHYYSFIKDrrGCGKGKWYKFNDTVIEEFDLND 358 RF xxx xxxxxxxxxx vle..........................rsssAYiLFY<-* ++ + + +++ +++ +++++ ++ ++r ++AY+LFY KIAA1057 359 -ETleyecfggeyrpkvydqtnpytdvrrRYWNAYMLFY 396 PF00443.19.ls: domain 1 of 1, from 43 to 396: score 193.2, E = 5.6e-55 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl g++GL+N G+TCYmN+v Q L++ p l + +ls ++++ KIAA1057 43 SGFVGLRNGGATCYMNAVFQQLYMQPGLPESLLSVDDDTDN------ 83 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++ s+ ++ + Lf +l ++ ++ +p+ ++ ++++++n+e+ + KIAA1057 84 -PDDSVFYQVQSLFGHLMESkLQYYVPENFW------KIFKMWNKELYVR 126 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt QQDA EF+++L+d+++e+l++ KIAA1057 127 EQQDAYEFFTSLIDQMDEYLKK---------------------------M 149 RF xxxxxxxxxxxxxxxx rnesiitdlFqGqlks.................................. + i ++ FqG++ +++ +++++++ ++++ + + +++++ + + KIAA1057 150 GRDQIFKNTFQGIYSDqkickdcphryereeafmalnlgvtscqsleisl 199 RF xxxxxxxxxxxxxxxxxxxxxx ............................klkikrLPpvLiihLKRFsyng ++ +++ ++++ ++++++++ + ++ ik+LP vL+ihL+RF +++ KIAA1057 200 dqfvrgevlegsnayycekckekritvkRTCIKSLPSVLVIHLMRFGFDW 249 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx etglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeerqr. e g+++K d ++ fP L++ +y +++ rq++ KIAA1057 250 ESGRSIKYDEQIRFPWMLNMEPYTVSG-----------------MARQDs 282 RF xxxxxxxxxxxxxxxxxxxxxxxx ..........................dedgnneeepeeeedneegenppt +++ ++++++ +++++++++++ +++ KIAA1057 283 ssevgengrsvdqggggsprkkvaltEN---------------------- 310 RF xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx kYeLyaVvvHsGsslssGHYiayikk..kkengkWykfDDekVsevteee YeL++V+vHsG +++ GHY+++ik+++ ++gkWykf+D+ ++e + + KIAA1057 311 -YELVGVIVHSG-QAHAGHYYSFIKDrrGCGKGKWYKFNDTVIEEFDLND 358 RF xxx xxxxxxxxxx vle..........................rsssAYiLFY<-* ++ + + +++ +++ +++++ ++ ++r ++AY+LFY KIAA1057 359 -ETleyecfggeyrpkvydqtnpytdvrrRYWNAYMLFY 396 //