hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16090455/chunk_1/iprscan-20080501-16090455.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1056 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 86.7 6.8e-23 6 PF00096.16.fs Zinc finger, C2H2 type 74.9 2.4e-19 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 2/6 461 484 .. 1 24 [] 20.5 0.0054 PF00096.16.fs 3/6 516 540 .. 1 24 [] 24.6 6.9e-05 PF00096.16.ls 3/6 516 540 .. 1 24 [] 26.6 8.2e-05 Alignments of top-scoring domains: PF00096.16.ls: domain 2 of 6, from 461 to 484: score 20.5, E = 0.0054 *->ykCpfdCgksFsrksnLkrHlrt.H<-* kCp +C+ ++ + +L H++ +H KIAA1056 461 LKCP-KCNWHYKYQQTLDVHMQEkH 484 PF00096.16.fs: domain 3 of 6, from 516 to 540: score 24.6, E = 6.9e-05 *->ykCpfdCgksFsrksnLkrHlrt..H<-* y+C+ +C++s ++k+nL H+++++H KIAA1056 516 YRCD-VCNYSTTTKGNLSIHMQSdkH 540 PF00096.16.ls: domain 3 of 6, from 516 to 540: score 26.6, E = 8.2e-05 *->ykCpfdCgksFsrksnLkrHlrt..H<-* y+C+ +C++s ++k+nL H+++++H KIAA1056 516 YRCD-VCNYSTTTKGNLSIHMQSdkH 540 //