hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15585207/chunk_1/iprscan-20080501-15585207.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1050 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08474.2.fs Myelin transcription factor 1 549.9 2.5e-162 2 PF08474.2.ls Myelin transcription factor 1 538.0 9.4e-159 1 PF01530.9.ls Zinc finger, C2HC type 405.9 5.4e-119 6 PF01530.9.fs Zinc finger, C2HC type 394.0 2.1e-115 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01530.9.ls 1/6 147 177 .. 1 31 [] 63.9 5e-16 PF01530.9.fs 1/6 147 177 .. 1 31 [] 61.9 1.4e-15 PF01530.9.fs 2/6 191 221 .. 1 31 [] 66.2 9.5e-17 PF01530.9.ls 2/6 191 221 .. 1 31 [] 68.2 2.4e-17 PF08474.2.ls 1/1 268 482 .. 1 270 [] 538.0 9.4e-159 PF08474.2.fs 1/2 268 323 .. 1 56 [. 155.4 2e-44 PF08474.2.fs 2/2 325 482 .. 100 270 .] 394.4 1.5e-115 PF01530.9.ls 3/6 505 535 .. 1 31 [] 71.9 1.9e-18 PF01530.9.fs 3/6 505 535 .. 1 31 [] 69.9 7.5e-18 PF01530.9.ls 4/6 549 579 .. 1 31 [] 72.9 9.3e-19 PF01530.9.fs 4/6 549 579 .. 1 31 [] 70.9 3.7e-18 PF01530.9.ls 5/6 598 628 .. 1 31 [] 67.4 4.1e-17 PF01530.9.fs 5/6 598 628 .. 1 31 [] 65.5 1.6e-16 PF01530.9.ls 6/6 651 681 .. 1 31 [] 61.6 2.4e-15 PF01530.9.fs 6/6 651 681 .. 1 31 [] 59.6 5.7e-15 Alignments of top-scoring domains: PF01530.9.ls: domain 1 of 6, from 147 to 177: score 63.9, E = 5e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* e+kCPtpGCdG+GHvtG y +HrslsGCP++ KIAA1050 147 EIKCPTPGCDGTGHVTGLYPHHRSLSGCPHK 177 PF01530.9.fs: domain 1 of 6, from 147 to 177: score 61.9, E = 1.4e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* e+kCPtpGCdG+GHvtG y +HrslsGCP++ KIAA1050 147 EIKCPTPGCDGTGHVTGLYPHHRSLSGCPHK 177 PF01530.9.fs: domain 2 of 6, from 191 to 221: score 66.2, E = 9.5e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGC+G+GHv++++++HrslsGCP+a KIAA1050 191 VLKCPTPGCTGQGHVNSNRNTHRSLSGCPIA 221 PF01530.9.ls: domain 2 of 6, from 191 to 221: score 68.2, E = 2.4e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGC+G+GHv++++++HrslsGCP+a KIAA1050 191 VLKCPTPGCTGQGHVNSNRNTHRSLSGCPIA 221 PF08474.2.ls: domain 1 of 1, from 268 to 482: score 538.0, E = 9.4e-159 *->YRsnVAittPRAnlAKElEKFSKvsFdYaSFDaqvFGKRalAPkvQT YR+nVA++tPRAnlAKElEKFSKv+FdYaSFDaqvFGKR+lAPk+QT KIAA1050 268 YRPNVAPATPRANLAKELEKFSKVTFDYASFDAQVFGKRMLAPKIQT 314 seiSPKayqdAkpFpKdsSPessssSsYvksssSssSaGGGasasSTvrk se+SPKa+q + KIAA1050 315 SETSPKAFQ----------------------------C------------ 324 SSFDYsqdaEaaHmAAAtAILNLSTRCREmpdnLStKPQdLCaaksadiE FDYsqdaEaaHm AAtAILNLSTRC+Emp+nLStKPQdL ++ks+diE KIAA1050 325 --FDYSQDAEAAHM-AATAILNLSTRCWEMPENLSTKPQDL-PSKSVDIE 370 VDENGTLDLSMkKnRkrdksiPssSScssiaTpksPdSpqkasstsAPSS VDENGTLDLSM+K+Rkr++++PssSScss++++ksPd++q++sstsAPSS KIAA1050 371 VDENGTLDLSMHKHRKRENAFPSSSSCSSSPGVKSPDASQRHSSTSAPSS 420 alvnarsyQAlseqdeWdlPvdYtKmKprrldEeEskekdPvdldfalee ++++++s+Q +s+qdeWd+P+dYt Kp+rl+EeE++e++P++++fa++e KIAA1050 421 SMTSPQSSQ-ASRQDEWDRPLDYT--KPSRLREEEPEESEPAAHSFASSE 467 leekkfagEvsIPSPKPkyeeRk<-* ++++++++E ++eeRk KIAA1050 468 ADDQEVSEE--------NFEERK 482 PF08474.2.fs: domain 1 of 2, from 268 to 323: score 155.4, E = 2e-44 *->YRsnVAittPRAnlAKElEKFSKvsFdYaSFDaqvFGKRalAPkvQT YR+nVA++tPRAnlAKElEKFSKv+FdYaSFDaqvFGKR+lAPk+QT KIAA1050 268 YRPNVAPATPRANLAKELEKFSKVTFDYASFDAQVFGKRMLAPKIQT 314 seiSPKayq<-* se+SPKa+q KIAA1050 315 SETSPKAFQ 323 PF08474.2.fs: domain 2 of 2, from 325 to 482: score 394.4, E = 1.5e-115 *->FDYsqdaEaaHmAAAtAILNLSTRCREmpdnLStKPQdLCaaksadi FDYsqdaEaaHm AAtAILNLSTRC+Emp+nLStKPQdL ++ks+di KIAA1050 325 FDYSQDAEAAHM-AATAILNLSTRCWEMPENLSTKPQDL-PSKSVDI 369 EVDENGTLDLSMkKnRkrdksiPssSScssiaTpksPdSpqkasstsAPS EVDENGTLDLSM+K+Rkr++++PssSScss++++ksPd++q++sstsAPS KIAA1050 370 EVDENGTLDLSMHKHRKRENAFPSSSSCSSSPGVKSPDASQRHSSTSAPS 419 SalvnarsyQAlseqdeWdlPvdYtKmKprrldEeEskekdPvdldfale S++++++s+Q +s+qdeWd+P+dYt Kp+rl+EeE++e++P++++fa++ KIAA1050 420 SSMTSPQSSQ-ASRQDEWDRPLDYT--KPSRLREEEPEESEPAAHSFASS 466 eleekkfagEvsIPSPKPkyeeRk<-* e++++++++E ++eeRk KIAA1050 467 EADDQEVSEE--------NFEERK 482 PF01530.9.ls: domain 3 of 6, from 505 to 535: score 71.9, E = 1.9e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +l+CPtpGCdGsGH+tG+y+sHrslsGCPla KIAA1050 505 LLTCPTPGCDGSGHITGNYASHRSLSGCPLA 535 PF01530.9.fs: domain 3 of 6, from 505 to 535: score 69.9, E = 7.5e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +l+CPtpGCdGsGH+tG+y+sHrslsGCPla KIAA1050 505 LLTCPTPGCDGSGHITGNYASHRSLSGCPLA 535 PF01530.9.ls: domain 4 of 6, from 549 to 579: score 72.9, E = 9.3e-19 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGCdGsGH+tG+y+sHrslsGCP+a KIAA1050 549 DLKCPTPGCDGSGHITGNYASHRSLSGCPRA 579 PF01530.9.fs: domain 4 of 6, from 549 to 579: score 70.9, E = 3.7e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGCdGsGH+tG+y+sHrslsGCP+a KIAA1050 549 DLKCPTPGCDGSGHITGNYASHRSLSGCPRA 579 PF01530.9.ls: domain 5 of 6, from 598 to 628: score 67.4, E = 4.1e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++kCP+pGC G+GH++Gky+sHrs+sGCPla KIAA1050 598 LMKCPVPGCVGLGHISGKYASHRSASGCPLA 628 PF01530.9.fs: domain 5 of 6, from 598 to 628: score 65.5, E = 1.6e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++kCP+pGC G+GH++Gky+sHrs+sGCPla KIAA1050 598 LMKCPVPGCVGLGHISGKYASHRSASGCPLA 628 PF01530.9.ls: domain 6 of 6, from 651 to 681: score 61.6, E = 2.4e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CPtpGCdGsGH +G++ +HrslsGCP+a KIAA1050 651 GPTCPTPGCDGSGHANGSFLTHRSLSGCPRA 681 PF01530.9.fs: domain 6 of 6, from 651 to 681: score 59.6, E = 5.7e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CPtpGCdGsGH +G++ +HrslsGCP+a KIAA1050 651 GPTCPTPGCDGSGHANGSFLTHRSLSGCPRA 681 //