hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15553813/chunk_1/iprscan-20080501-15553813.nocrc
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Query sequence: KIAA1048
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 166.4    2.8e-45   1
SM00219                                                 -64.8      4e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      80   346 ..     1   280 []   -64.8    4e-07
SM00220    1/1      80   347 ..     1   231 []   166.4  2.8e-45

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 80 to 346: score -64.8, E = 4e-07
                   *->ltlgkkLGeGaFGeVykGtlk..ieVAVKtLkeda...keeFlrEak
                      +t +++L eG F +V++ + ++++++A K +  + +++++   rE++
    KIAA1048    80    VTVDEVLAEGGFAIVFLVRTSngMKCALKRMFVNNehdLQVCKREIQ 126  

                   iMkklGgkHpNiVkLl.....GvcteegrrFmevePlmivmEymegGdLl
                   iM+ l   H+NiV  ++++ + v + +      v  ++i+m ++ gG   
    KIAA1048   127 IMRDL-SGHKNIVGYIdssinNVSSGD------VWEVLILMDFCRGGQVV 169  

                   dyLrknrpk..lslsdLlsfAlQIAkGMeYLesk..nfvHRDLAARNcLv
                   +   + r +++++  + l++  + ++  + L++ +++++HRDL   N+L+
    KIAA1048   170 NLM-NQRLQtgFTENEVLQIFCDTCEAVARLHQCktPIIHRDLKVENILL 218  

                   genkvvKIsDFGLsRdlyddDkkG....eskdyYrkkggkggktllPirW
                   +++++   +DFG + +      + ++ ++ +d ++k     +   l +r 
    KIAA1048   219 HDRGHYVLCDFGSATNKFQN-PQTegvnAVEDEIKK----YTT--LSYR- 260  

                   mAPEsl...kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsnee
                    APE  +    ++ t+k D+W+ G lL+ ++ +   P  +        ++
    KIAA1048   261 -APEMVnlySGKIITTKADIWALGCLLYKLCYF-TLPFGE--------SQ 300  

                   vleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel
                   v  +  +   ++   +         +++++ l++   + dP++RP   ++
    KIAA1048   301 VAICDGNFTIPDNSRY---------SQDMHCLIRYMLEPDPDKRPDIYQV 341  

                   .verl<-*
                   ++  +   
    KIAA1048   342 sYFSF    346  

SM00220: domain 1 of 1, from 80 to 347: score 166.4, E = 2.8e-45
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi
                       ++ ++l +G+F+ V+l+r  + g ++A+K++  +++++ +  +rEi
    KIAA1048    80    VTVDEVLAEGGFAIVFLVRTSN-GMKCALKRMFvnnehdlQVCKREI 125  

                   kiLkk..dHPNIVkLydvfed.......dklylVmEyceGdlGdLfdllk
                   +i++  ++H+NIV ++d+  ++ ++++  ++ + m++c G  G +  l+ 
    KIAA1048   126 QIMRDlsGHKNIVGYIDSSINnvssgdvWEVLILMDFCRG--GQVVNLMN 173  

                   krgrrglrkvlsE.earfyfrQilsaLeYLHsq..gIiHRDLKPeNiLLd
                   +r       +++E+e+  +f+ +++a++ LH+ ++ IiHRDLK eNiLL 
    KIAA1048   174 QRLQ----TGFTEnEVLQIFCDTCEAVARLHQCktPIIHRDLKVENILLH 219  

                   s..hvKlaDFGlArql...............ttfvGTpeYmAPEvl....
                   +++h  l+DFG+A+   +++++++ +  +++     T+ Y+APE+++  +
    KIAA1048   220 DrgHYVLCDFGSATNKfqnpqtegvnavedeIKKYTTLSYRAPEMVnlys 269  

                   ..gYgkpavDiWSlGcilyElltGkpPFp.qldlifkkig........Sp
                   ++  ++ ++DiW+lGc+ly l++   PF + + +i +   + ++++++S+
    KIAA1048   270 gkIITT-KADIWALGCLLYKLCYFTLPFGeSQVAICDGNFtipdnsrySQ 318  

                   eakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   ++  Li+ +L+ dP+kR+ + ++           f    
    KIAA1048   319 DMHCLIRYMLEPDPDKRPDIyQVSY-------FSFK    347  

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