# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh02560.fasta.huge -Q ../query/KIAA1048.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1048, 897 aa
 vs ./tmplib.24314 library

1986608 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 16.3680+/-0.0149; mu= -39.0123+/- 1.005
 mean_var=883.5291+/-210.261, 0's: 0 Z-trim: 9  B-trim: 0 in 0/40
 Lambda= 0.043148

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1819  ( 1173 res)   hh00456                    (1173)  357 38.3  0.0064


>>KIAA1819  ( 1173 res)   hh00456                         (1173 aa)
 initn: 400 init1: 229 opt: 357  Z-score: 144.3  bits: 38.3 E(): 0.0064
Smith-Waterman score: 378;  26.494% identity (52.208% similar) in 385 aa overlap (354-722:409-767)

           330       340       350       360       370        380  
KIAA10 IRYMLEPDPDKRPDIYQVSYFSFKLLKKECPIPNVQNSPIPAKLPEP-VKASEAAAKKTQ
                                     :  .. :: . .. : : :  :.:  .  .
KIAA18 MEKIVIKSEYSPGLTQGPSGSPQLRPPSAGPAFSMANSALSTSSPIPSVPQSQAQPQTGS
      380       390       400       410       420       430        

            390        400       410       420       430       440 
KIAA10 PKARLTDPIPT-TETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRATVQPPPQAAGSSN
         .:    .:.  :.: : . .  :.. : .  .   :    : . ...   :..:: : 
KIAA18 GASR---ALPSWQEVSHAQQLKQIAANRQQHARMQQHQQQHQPTNWSAL---PSSAGPSP
      440          450       460       470       480          490  

             450           460       470           480       490   
KIAA10 QPGLLASVPQP----KPQAPPSQPLPQTQAKQPQ----APPTPQQTPSTQAQGLPAQAQA
        :    ..:.:    .  .: :.:.: . . . :    :    .  ::.:.  : .  : 
KIAA18 GPFGQEKIPSPSFGQQTFSPQSSPMPGVAGGSGQSKVMANYMYKAGPSAQGGHLDVLMQQ
            500       510       520       530       540       550  

           500       510       520       530       540       550   
KIAA10 TPQHQQQLFLKQQQQQQQPPPAQQQPAGTFYQQQQAQTQQFQAVHPATQQPAIAQFPVVS
        ::  .. :... .  ..:  .. .:   : ..:   .::. .: :. ..:.. ..    
KIAA18 KPQDLSRSFINNPHPAMEPRQGNTKPLFHFNSDQA--NQQMPSVLPSQNKPSLLHY----
            560       570       580         590       600          

           560       570       580       590       600       610   
KIAA10 QGGSQQQLMQNFYQQQQQQQQQQQQQQLATALHQQQLMTQQAALQQKPTMAAGQQPQPQP
          .::: .:.  ::::::::::::::     .::. .. :   ::. ...: :: : : 
KIAA18 ---TQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQQQQQ
           610       620       630       640       650       660   

           620       630       640       650       660       670   
KIAA10 AAAPQPAPAQEPAIQAPVRQQPKVQTTPPPAVQGQKVGSLTPPSSPKTQRAGHRRILSDV
           :    :.   :   .:::. :  :  .. .: .  :  :  :  :.     .:...
KIAA18 QQQQQQQQQQQQQQQQ--QQQPSSQ--PAQSLPSQPL--LRSPL-PLQQKL----LLQQM
           670         680         690         700            710  

           680       690       700       710             720       
KIAA10 THSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRT------SQQNVYNPSEGS
        .. . :.  . : :  :   . .. : . : . .: ..: :      :::.. :     
KIAA18 QNQPIAGMGYQVSQQQRQDQHSVVGQNTGPSPSPNPCSNPNTGSGYMNSQQSLLNQQLMG
            720       730       740       750       760       770  

       730       740       750       760       770       780       
KIAA10 TWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQSTQGDAFATTSFS
                                                                   
KIAA18 KKQTLQRQIMEQKQQLLLQQQMLADAEKIAPQDQINRHLSRPPPDYKDQRRNVGNMQPTA
            780       790       800       810       820       830  




897 residues in 1 query   sequences
1986608 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:06 2008 done: Thu Dec 18 15:07:07 2008
 Total Scan time:  0.640 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]