hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15484671/chunk_1/iprscan-20080501-15484671.nocrc
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Query sequence: KIAA1044
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF02214.13.fs K+ channel tetramerisation domain           160.2    9.2e-48   1
PF02214.13.ls K+ channel tetramerisation domain           162.1    1.3e-45   1
PF00520.21.ls Ion transport protein                       154.9    1.9e-43   1
PF00520.21.fs Ion transport protein                       153.2    6.5e-43   1
PF07885.6.fs Ion channel                                  59.8    5.2e-17   1
PF07885.6.ls Ion channel                                  61.8    2.1e-15   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF02214.13.fs   1/1      59   148 ..     1   102 []   160.2  9.2e-48
PF02214.13.ls   1/1      59   148 ..     1   102 []   162.1  1.3e-45
PF00520.21.ls   1/1     247   421 ..     1   224 []   154.9  1.9e-43
PF00520.21.fs   1/1     247   421 ..     1   224 []   153.2  6.5e-43
PF07885.6.fs   1/1     346   427 ..     1    81 []    59.8  5.2e-17
PF07885.6.ls   1/1     346   427 ..     1    81 []    61.8  2.1e-15

Alignments of top-scoring domains:
PF02214.13.fs: domain 1 of 1, from 59 to 148: score 160.2, E = 9.2e-48
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      ++LNV+G+rF+T+++TL+r+ PdTlLg+ ++           +fy +
    KIAA1044    59    IVLNVSGTRFQTWQDTLERY-PDTLLGSSER----------DFFYHP 94   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFyglde
                   +t+ yFFDR+P++F++ILnfYRt  GkLh+p+++c+ +++eEl+F+gl +
    KIAA1044    95 ETQQYFFDRDPDIFRHILNFYRT--GKLHYPrHECISAYDEELAFFGLIP 142  

                   laielC<-*
                   ++i++C   
    KIAA1044   143 EIIGDC    148  

PF02214.13.ls: domain 1 of 1, from 59 to 148: score 162.1, E = 1.3e-45
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      ++LNV+G+rF+T+++TL+r+ PdTlLg+ ++           +fy +
    KIAA1044    59    IVLNVSGTRFQTWQDTLERY-PDTLLGSSER----------DFFYHP 94   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFyglde
                   +t+ yFFDR+P++F++ILnfYRt  GkLh+p+++c+ +++eEl+F+gl +
    KIAA1044    95 ETQQYFFDRDPDIFRHILNFYRT--GKLHYPrHECISAYDEELAFFGLIP 142  

                   laielC<-*
                   ++i++C   
    KIAA1044   143 EIIGDC    148  

PF00520.21.ls: domain 1 of 1, from 247 to 421: score 154.9, E = 1.9e-43
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +ld+++++iFt+E+ll++ a++ +      ++++rs + i+D++++l
    KIAA1044   247    CLDTACVMIFTVEYLLRLAAAPSR------YRFVRSVMSIIDVVAIL 287  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   p++i+l+++  +                      ++ +++ +lR++R   
    KIAA1044   288 PYYIGLVMTDNE----------------------DVSGAFVTLRVFR--- 312  

                   llrlirrapglfRWelrtlWelnslg.rslksllnvllllllllfiFaii
                   ++r++++++      ++++  l++lg +   +  ++++ll+ l +++ i+
    KIAA1044   313 VFRIFKFSR------HSQG--LRILGyTLKSCASELGFLLFSLTMAIIIF 354  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtla
                   +  +F++++  +       + F+s++ af+ +++tmTt G+gd++p+   
    KIAA1044   355 ATVMFYAEKGSS------ASKFTSIPAAFWYTIVTMTTLGYGDMVPK--- 395  

                   gtvlgyiyfvsfiilgsflllNLfiavi<-*
                    t+ g+i++ s + l+++l+++L+++vi   
    KIAA1044   396 -TIAGKIFG-SICSLSGVLVIALPVPVI    421  

PF00520.21.fs: domain 1 of 1, from 247 to 421: score 153.2, E = 6.5e-43
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +ld+++++iFt+E+ll++ a++ +      ++++rs + i+D++++l
    KIAA1044   247    CLDTACVMIFTVEYLLRLAAAPSR------YRFVRSVMSIIDVVAIL 287  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   p++i+l+++  +                      ++ +++ +lR++R   
    KIAA1044   288 PYYIGLVMTDNE----------------------DVSGAFVTLRVFR--- 312  

                   llrlirrapglfRWelrtlWelnslg.rslksllnvllllllllfiFaii
                   ++r++++++      ++++  l++lg +   +  ++++ll+ l +++ i+
    KIAA1044   313 VFRIFKFSR------HSQG--LRILGyTLKSCASELGFLLFSLTMAIIIF 354  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtla
                   +  +F++++  +       + F+s++ af+ +++tmTt G+gd++p+   
    KIAA1044   355 ATVMFYAEKGSS------ASKFTSIPAAFWYTIVTMTTLGYGDMVPK--- 395  

                   gtvlgyiyfvsfiilgsflllNLfiavi<-*
                    t+ g+i++ s + l+++l+++L+++vi   
    KIAA1044   396 -TIAGKIFG-SICSLSGVLVIALPVPVI    421  

PF07885.6.fs: domain 1 of 1, from 346 to 427: score 59.8, E = 5.2e-17
                   *->iilllvlifgtvyyalepeeg.we.wsfldalYFsfvTlTTiGYGDi
                       ++ +++if+tv+++ e +++     s   a+++++vT+TT GYGD+
    KIAA1044   346    SLTMAIIIFATVMFYAEKGSSaSKfTSIPAAFWYTIVTMTTLGYGDM 392  

                   vPlstdaGRlftivyiliGiplfalllavlgrflte<-*
                   vP  t aG++f  +  l G+ ++al + v+++ +++   
    KIAA1044   393 VPK-TIAGKIFGSICSLSGVLVIALPVPVIVSNFSR    427  

PF07885.6.ls: domain 1 of 1, from 346 to 427: score 61.8, E = 2.1e-15
                   *->iilllvlifgtvyyalepeeg.we.wsfldalYFsfvTlTTiGYGDi
                       ++ +++if+tv+++ e +++     s   a+++++vT+TT GYGD+
    KIAA1044   346    SLTMAIIIFATVMFYAEKGSSaSKfTSIPAAFWYTIVTMTTLGYGDM 392  

                   vPlstdaGRlftivyiliGiplfalllavlgrflte<-*
                   vP  t aG++f  +  l G+ ++al + v+++ +++   
    KIAA1044   393 VPK-TIAGKIFGSICSLSGVLVIALPVPVIVSNFSR    427  

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