hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15465801/chunk_1/iprscan-20080501-15465801.nocrc
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Query sequence: KIAA1043
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00028 436.9 1.1e-126 20
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00028 1/20 2 32 .. 1 34 [] 16.7 3.3
SM00028 2/20 39 72 .. 1 34 [] 29.4 0.00049
SM00028 3/20 79 112 .. 1 34 [] 17.1 2.4
SM00028 4/20 119 152 .. 1 34 [] 13.5 15
SM00028 5/20 159 192 .. 1 34 [] 23.1 0.038
SM00028 6/20 199 232 .. 1 34 [] 27.7 0.0016
SM00028 7/20 239 272 .. 1 34 [] 29.0 0.00064
SM00028 8/20 279 312 .. 1 34 [] 31.7 0.0001
SM00028 9/20 319 352 .. 1 34 [] 15.2 9
SM00028 10/20 359 392 .. 1 34 [] 17.9 1.5
SM00028 11/20 399 432 .. 1 34 [] 18.2 1.2
SM00028 12/20 439 472 .. 1 34 [] 26.1 0.005
SM00028 13/20 479 512 .. 1 34 [] 15.5 7.8
SM00028 14/20 522 555 .. 1 34 [] 35.5 7.2e-06
SM00028 15/20 562 595 .. 1 34 [] 22.0 0.085
SM00028 16/20 602 635 .. 1 34 [] 31.3 0.00013
SM00028 17/20 642 675 .. 1 34 [] 18.5 0.91
SM00028 18/20 682 715 .. 1 34 [] 15.5 7.5
SM00028 19/20 722 755 .. 1 34 [] 23.0 0.042
SM00028 20/20 762 795 .. 1 34 [] 9.9 38
Alignments of top-scoring domains:
SM00028: domain 1 of 20, from 2 to 32: score 16.7, E = 3.3
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
l n+G +y ++gd++ A+++ e+ L+++ +
KIAA1043 2 ---LGNMGAVYIAMGDFENAVQCHEQHLKIAKDL 32
SM00028: domain 2 of 20, from 39 to 72: score 29.4, E = 0.00049
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
a+a++nlG ay+ + ++d+A+ y + +Lel+ +
KIAA1043 39 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQEL 72
SM00028: domain 3 of 20, from 79 to 112: score 17.1, E = 2.4
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
+a+ lG+a + + d++ A +y e+ L ++++
KIAA1043 79 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL 112
SM00028: domain 4 of 20, from 119 to 152: score 13.5, E = 15
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
+a +nlG ++ +gdyd A++ + L ++ +
KIAA1043 119 GRASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL 152
SM00028: domain 5 of 20, from 159 to 192: score 23.1, E = 0.038
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
+a+ n+Gnay +lg yd+A++y ++ L++ +
KIAA1043 159 GRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV 192
SM00028: domain 6 of 20, from 199 to 232: score 27.7, E = 0.0016
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
a ++ nl++ay +lg +d A+++y+ L ++++
KIAA1043 199 ASTHGNLAVAYQALGAHDRALQHYQNHLNIAREL 232
SM00028: domain 7 of 20, from 239 to 272: score 29.0, E = 0.00064
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
a+al+nlGn + ++g+y +A yye+ L+l+P+
KIAA1043 239 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL 272
SM00028: domain 8 of 20, from 279 to 312: score 31.7, E = 0.0001
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
+++ nlG a++ lg+y+eA++yye+ L+l+ +
KIAA1043 279 GKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDL 312
SM00028: domain 9 of 20, from 319 to 352: score 15.2, E = 9
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
a+a++nlG+a+ +l ++ +A+e+ + L+l+ +
KIAA1043 319 AKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSL 352
SM00028: domain 10 of 20, from 359 to 392: score 17.9, E = 1.5
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
+al nlG ++ ++d++ Ai++ye+ L l+ +
KIAA1043 359 FRALGNLGDIFICKKDINGAIKFYEQQLGLAHQV 392
SM00028: domain 11 of 20, from 399 to 432: score 18.2, E = 1.2
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
a a+ lG ay+ +yd+A+ y ++ Le+ +
KIAA1043 399 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQEL 432
SM00028: domain 12 of 20, from 439 to 472: score 26.1, E = 0.005
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
+a+ l+ +y++lg+y +A ++ye+ L+l +
KIAA1043 439 CRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKL 472
SM00028: domain 13 of 20, from 479 to 512: score 15.5, E = 7.8
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
a+++ n+G ++++ +eAi y+e+ L++ +
KIAA1043 479 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQL 512
SM00028: domain 14 of 20, from 522 to 555: score 35.5, E = 7.2e-06
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
+a+ nlG +y++lgdy+eAi+yye+ L+++ +
KIAA1043 522 GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL 555
SM00028: domain 15 of 20, from 562 to 595: score 22.0, E = 0.085
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
a+a+ lGn ++++g +++A+ ++ek L ++ +
KIAA1043 562 AKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHEL 595
SM00028: domain 16 of 20, from 602 to 635: score 31.3, E = 0.00013
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
a+a+ lG ++ +lg+y++Ai ++e+ L ++++
KIAA1043 602 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 635
SM00028: domain 17 of 20, from 642 to 675: score 18.5, E = 0.91
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
++a + lG +y ++g+yd A++y + L+++++
KIAA1043 642 SDAACGLGGVYQQMGEYDTALQYHQLDLQIAEET 675
SM00028: domain 18 of 20, from 682 to 715: score 15.5, E = 7.5
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
+a+ nlG+ y++lg ++ A+ y e+ L+++ +
KIAA1043 682 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQM 715
SM00028: domain 19 of 20, from 722 to 755: score 23.0, E = 0.042
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
++ lG +++l +y +A+ y+++ L+l+++
KIAA1043 722 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL 755
SM00028: domain 20 of 20, from 762 to 795: score 9.9, E = 38
*->aealynlGnaylklgdydeAieyyekALeldPnn<-*
a++ lG+++ + g+++eA + +A +l ++
KIAA1043 762 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETI 795
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