hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15465801/chunk_1/iprscan-20080501-15465801.nocrc
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Query sequence: KIAA1043
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00515.18.ls Tetratricopeptide repeat 362.6 5.8e-106 20
PF00515.18.fs Tetratricopeptide repeat 342.8 5.2e-100 20
PF07719.7.ls Tetratricopeptide repeat 290.8 2.4e-84 20
PF07719.7.fs Tetratricopeptide repeat 268.3 1.4e-77 19
PF07721.5.ls Tetratricopeptide repeat 77.2 4.6e-20 10
PF07721.5.fs Tetratricopeptide repeat 72.6 2.6e-19 11
PF07720.3.ls Tetratricopeptide repeat 17.9 0.033 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00515.18.ls 1/20 1 32 [. 1 34 [] 14.9 0.084
PF00515.18.fs 1/20 2 32 .. 4 34 .] 19.3 0.00017
PF07719.7.ls 2/20 39 72 .. 1 34 [] 21.4 0.0029
PF00515.18.fs 2/20 39 72 .. 1 34 [] 24.4 6.2e-06
PF00515.18.ls 2/20 39 72 .. 1 34 [] 26.4 9.4e-05
PF00515.18.fs 4/20 119 152 .. 1 34 [] 10.3 0.064
PF00515.18.ls 4/20 119 152 .. 1 34 [] 12.3 0.17
PF00515.18.fs 5/20 159 184 .. 1 26 [. 21.6 3.8e-05
PF00515.18.ls 5/20 159 192 .. 1 34 [] 19.6 0.011
PF00515.18.ls 6/20 199 232 .. 1 34 [] 26.1 0.00012
PF07721.5.ls 3/10 199 224 .. 1 26 [] 17.2 0.055
PF00515.18.fs 6/20 199 232 .. 1 34 [] 24.1 7.5e-06
PF07719.7.fs 7/19 239 272 .. 1 34 [] 26.3 2.4e-06
PF00515.18.fs 7/20 239 272 .. 1 34 [] 29.3 2.5e-07
PF00515.18.ls 7/20 239 272 .. 1 34 [] 31.3 3.2e-06
PF07719.7.ls 7/20 239 272 .. 1 34 [] 28.3 2.4e-05
PF07720.3.ls 1/2 279 312 .. 1 38 [] 8.6 0.82
PF07719.7.ls 8/20 279 312 .. 1 34 [] 32.7 1.2e-06
PF07719.7.fs 8/19 279 312 .. 1 34 [] 30.7 1.5e-07
PF00515.18.ls 8/20 279 312 .. 1 34 [] 23.9 0.00051
PF00515.18.fs 8/20 279 312 .. 1 34 [] 21.9 3.1e-05
PF00515.18.fs 9/20 319 341 .. 1 23 [. 17.7 0.0005
PF00515.18.ls 9/20 319 352 .. 1 34 [] 14.8 0.084
PF00515.18.fs 10/20 359 384 .. 1 26 [. 8.5 0.21
PF00515.18.ls 10/20 359 392 .. 1 34 [] 9.4 0.37
PF00515.18.fs 11/20 399 432 .. 1 34 [] 14.7 0.0035
PF00515.18.ls 11/20 399 432 .. 1 34 [] 16.7 0.05
PF00515.18.ls 12/20 439 472 .. 1 34 [] 17.9 0.033
PF00515.18.fs 12/20 439 464 .. 1 26 [. 15.9 0.0016
PF00515.18.ls 13/20 479 512 .. 1 34 [] 8.1 0.53
PF07719.7.fs 13/19 522 555 .. 1 34 [] 31.5 8.8e-08
PF00515.18.ls 14/20 522 555 .. 1 34 [] 37.5 4.2e-08
PF00515.18.fs 14/20 522 555 .. 1 34 [] 35.5 4.2e-09
PF07719.7.ls 14/20 522 555 .. 1 34 [] 33.5 7e-07
PF00515.18.ls 15/20 562 595 .. 1 34 [] 17.7 0.038
PF00515.18.fs 15/20 562 587 .. 1 26 [. 16.7 0.00092
PF07719.7.ls 16/20 602 635 .. 1 34 [] 20.2 0.0067
PF00515.18.fs 16/20 602 635 .. 1 34 [] 24.0 8e-06
PF00515.18.ls 16/20 602 635 .. 1 34 [] 26.0 0.00012
PF00515.18.ls 17/20 642 675 .. 1 34 [] 13.7 0.11
PF07720.3.ls 2/2 642 676 .. 1 38 [] 9.4 0.65
PF00515.18.fs 17/20 642 666 .. 1 25 [. 13.3 0.0087
PF00515.18.fs 18/20 682 715 .. 1 34 [] 11.9 0.023
PF00515.18.ls 18/20 682 715 .. 1 34 [] 13.9 0.11
PF00515.18.fs 19/20 722 755 .. 1 34 [] 16.8 0.00091
PF00515.18.ls 19/20 722 755 .. 1 34 [] 18.8 0.019
Alignments of top-scoring domains:
PF00515.18.ls: domain 1 of 20, from 1 to 32: score 14.9, E = 0.084
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ n+G++y ++g+++ A+++ e+ L++ +
KIAA1043 1 --ELGNMGAVYIAMGDFENAVQCHEQHLKIAKDL 32
PF00515.18.fs: domain 1 of 20, from 2 to 32: score 19.3, E = 0.00017
*->yynlGnaylklgkydeAieayekALeldPnn<-*
+ n+G++y ++g+++ A+++ e+ L++ +
KIAA1043 2 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDL 32
PF07719.7.ls: domain 2 of 20, from 39 to 72: score 21.4, E = 0.0029
*->aealynlGlayyklgdyeeAleayekAleldPnn<-*
a+a+ nlG ay +++++++A + + +lel+ +
KIAA1043 39 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQEL 72
PF00515.18.fs: domain 2 of 20, from 39 to 72: score 24.4, E = 6.2e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+ay nlG ay+ + ++d+A + + +Lel +
KIAA1043 39 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQEL 72
PF00515.18.ls: domain 2 of 20, from 39 to 72: score 26.4, E = 9.4e-05
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+ay nlG ay+ + ++d+A + + +Lel +
KIAA1043 39 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQEL 72
PF00515.18.fs: domain 4 of 20, from 119 to 152: score 10.3, E = 0.064
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+a nlG ++ +g+yd A++ + L + +
KIAA1043 119 GRASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL 152
PF00515.18.ls: domain 4 of 20, from 119 to 152: score 12.3, E = 0.17
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+a nlG ++ +g+yd A++ + L + +
KIAA1043 119 GRASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL 152
PF00515.18.fs: domain 5 of 20, from 159 to 184: score 21.6, E = 3.8e-05
*->aeayynlGnaylklgkydeAieayek<-*
+ay n+Gnay +lg yd+A+++ ++
KIAA1043 159 GRAYGNMGNAYNALGMYDQAVKYHRQ 184
PF00515.18.ls: domain 5 of 20, from 159 to 192: score 19.6, E = 0.011
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ay n+Gnay +lg yd+A+++ ++ L++ +
KIAA1043 159 GRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV 192
PF00515.18.ls: domain 6 of 20, from 199 to 232: score 26.1, E = 0.00012
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a ++ nl++ay +lg +d A+++y+ L + ++
KIAA1043 199 ASTHGNLAVAYQALGAHDRALQHYQNHLNIAREL 232
PF07721.5.ls: domain 3 of 10, from 199 to 224: score 17.2, E = 0.055
*->arallaLArallalGdlaeArallrr<-*
a ++ +LA a++alG +++A+++ +
KIAA1043 199 ASTHGNLAVAYQALGAHDRALQHYQN 224
PF00515.18.fs: domain 6 of 20, from 199 to 232: score 24.1, E = 7.5e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a ++ nl++ay +lg +d A+++y+ L + ++
KIAA1043 199 ASTHGNLAVAYQALGAHDRALQHYQNHLNIAREL 232
PF07719.7.fs: domain 7 of 19, from 239 to 272: score 26.3, E = 2.4e-06
*->aealynlGlayyklgdyeeAleayekAleldPnn<-*
a+al nlG+ + +g+y +A+ +ye+ l+l+P+
KIAA1043 239 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL 272
PF00515.18.fs: domain 7 of 20, from 239 to 272: score 29.3, E = 2.5e-07
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+a+ nlGn + ++g+y +A +ye+ L+l P+
KIAA1043 239 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL 272
PF00515.18.ls: domain 7 of 20, from 239 to 272: score 31.3, E = 3.2e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+a+ nlGn + ++g+y +A +ye+ L+l P+
KIAA1043 239 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL 272
PF07719.7.ls: domain 7 of 20, from 239 to 272: score 28.3, E = 2.4e-05
*->aealynlGlayyklgdyeeAleayekAleldPnn<-*
a+al nlG+ + +g+y +A+ +ye+ l+l+P+
KIAA1043 239 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL 272
PF07720.3.ls: domain 1 of 2, from 279 to 312: score 8.6, E = 0.82
*->leylyslWLAavfynkgkyqeAeelfsYallaildken<-*
+ + l +++ y g+yqeA+++ Y++ +l+k+
KIAA1043 279 GKVCHNL--GYAHYCLGNYQEAVKY--YEQDLALAKDL 312
PF07719.7.ls: domain 8 of 20, from 279 to 312: score 32.7, E = 1.2e-06
*->aealynlGlayyklgdyeeAleayekAleldPnn<-*
++++nlG a+y lg+y+eA+++ye+ l+l+++
KIAA1043 279 GKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDL 312
PF07719.7.fs: domain 8 of 19, from 279 to 312: score 30.7, E = 1.5e-07
*->aealynlGlayyklgdyeeAleayekAleldPnn<-*
++++nlG a+y lg+y+eA+++ye+ l+l+++
KIAA1043 279 GKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDL 312
PF00515.18.ls: domain 8 of 20, from 279 to 312: score 23.9, E = 0.00051
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+++ nlG+a++ lg+y+eA+++ye+ L+l +
KIAA1043 279 GKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDL 312
PF00515.18.fs: domain 8 of 20, from 279 to 312: score 21.9, E = 3.1e-05
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+++ nlG+a++ lg+y+eA+++ye+ L+l +
KIAA1043 279 GKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDL 312
PF00515.18.fs: domain 9 of 20, from 319 to 341: score 17.7, E = 0.0005
*->aeayynlGnaylklgkydeAiea<-*
a+ay+nlG+a+ +l ++ +A+e+
KIAA1043 319 AKAYCNLGLAFKALLNFSKAEEC 341
PF00515.18.ls: domain 9 of 20, from 319 to 352: score 14.8, E = 0.084
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+ay+nlG+a+ +l ++ +A+e+ + L+l +
KIAA1043 319 AKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSL 352
PF00515.18.fs: domain 10 of 20, from 359 to 384: score 8.5, E = 0.21
*->aeayynlGnaylklgkydeAieayek<-*
+a+ nlG ++ +++ + Ai++ye+
KIAA1043 359 FRALGNLGDIFICKKDINGAIKFYEQ 384
PF00515.18.ls: domain 10 of 20, from 359 to 392: score 9.4, E = 0.37
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+a+ nlG ++ +++ + Ai++ye+ L l +
KIAA1043 359 FRALGNLGDIFICKKDINGAIKFYEQQLGLAHQV 392
PF00515.18.fs: domain 11 of 20, from 399 to 432: score 14.7, E = 0.0035
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a ay lG ay+ +kyd+A+ + ++ Le+ +
KIAA1043 399 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQEL 432
PF00515.18.ls: domain 11 of 20, from 399 to 432: score 16.7, E = 0.05
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a ay lG ay+ +kyd+A+ + ++ Le+ +
KIAA1043 399 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQEL 432
PF00515.18.ls: domain 12 of 20, from 439 to 472: score 17.9, E = 0.033
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+a+ l+++y++lgky A ++ye+ L+l +
KIAA1043 439 CRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKL 472
PF00515.18.fs: domain 12 of 20, from 439 to 464: score 15.9, E = 0.0016
*->aeayynlGnaylklgkydeAieayek<-*
+a+ l+++y++lgky A ++ye+
KIAA1043 439 CRAHGHLAAVYMALGKYTMAFKCYEE 464
PF00515.18.ls: domain 13 of 20, from 479 to 512: score 8.1, E = 0.53
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a++y n+G + ++++ +eAi ++e+ L++ +
KIAA1043 479 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQL 512
PF07719.7.fs: domain 13 of 19, from 522 to 555: score 31.5, E = 8.8e-08
*->aealynlGlayyklgdyeeAleayekAleldPnn<-*
+a+ nlG++y++lgdyeeA+++ye+ l+ + +
KIAA1043 522 GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL 555
PF00515.18.ls: domain 14 of 20, from 522 to 555: score 37.5, E = 4.2e-08
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ay nlG +y++lg+y+eAi++ye+ L++ +
KIAA1043 522 GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL 555
PF00515.18.fs: domain 14 of 20, from 522 to 555: score 35.5, E = 4.2e-09
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ay nlG +y++lg+y+eAi++ye+ L++ +
KIAA1043 522 GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL 555
PF07719.7.ls: domain 14 of 20, from 522 to 555: score 33.5, E = 7e-07
*->aealynlGlayyklgdyeeAleayekAleldPnn<-*
+a+ nlG++y++lgdyeeA+++ye+ l+ + +
KIAA1043 522 GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL 555
PF00515.18.ls: domain 15 of 20, from 562 to 595: score 17.7, E = 0.038
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+ay lGn ++++g +++A+ ++ek L + +
KIAA1043 562 AKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHEL 595
PF00515.18.fs: domain 15 of 20, from 562 to 587: score 16.7, E = 0.00092
*->aeayynlGnaylklgkydeAieayek<-*
a+ay lGn ++++g +++A+ ++ek
KIAA1043 562 AKAYRGLGNGHRAMGSLQQALVCFEK 587
PF07719.7.ls: domain 16 of 20, from 602 to 635: score 20.2, E = 0.0067
*->aealynlGlayyklgdyeeAleayekAleldPnn<-*
a a+ lG ++ +lg+ye+A+ ++e+ l ++ +
KIAA1043 602 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 635
PF00515.18.fs: domain 16 of 20, from 602 to 635: score 24.0, E = 8e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+ay lG ++ +lg+y++Ai ++e+ L + ++
KIAA1043 602 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 635
PF00515.18.ls: domain 16 of 20, from 602 to 635: score 26.0, E = 0.00012
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+ay lG ++ +lg+y++Ai ++e+ L + ++
KIAA1043 602 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 635
PF00515.18.ls: domain 17 of 20, from 642 to 675: score 13.7, E = 0.11
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
++a + lG +y ++g+yd A+++ + L++ ++
KIAA1043 642 SDAACGLGGVYQQMGEYDTALQYHQLDLQIAEET 675
PF07720.3.ls: domain 2 of 2, from 642 to 676: score 9.4, E = 0.65
*->leylyslWLAavfynkgkyqeAeelfsYal.laildken<-*
++ +l + v++++g+y++A+++ + l+l+i ++ n
KIAA1043 642 SDAACGL--GGVYQQMGEYDTALQYHQ--LdLQIAEETN 676
PF00515.18.fs: domain 17 of 20, from 642 to 666: score 13.3, E = 0.0087
*->aeayynlGnaylklgkydeAieaye<-*
++a + lG +y ++g+yd A+++ +
KIAA1043 642 SDAACGLGGVYQQMGEYDTALQYHQ 666
PF00515.18.fs: domain 18 of 20, from 682 to 715: score 11.9, E = 0.023
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ay nlG++y++lg ++ A+ + e+ L++ +
KIAA1043 682 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQM 715
PF00515.18.ls: domain 18 of 20, from 682 to 715: score 13.9, E = 0.11
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ay nlG++y++lg ++ A+ + e+ L++ +
KIAA1043 682 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQM 715
PF00515.18.fs: domain 19 of 20, from 722 to 755: score 16.8, E = 0.00091
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
y lG ++++l++y +A+ ++++ L+l ++
KIAA1043 722 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL 755
PF00515.18.ls: domain 19 of 20, from 722 to 755: score 18.8, E = 0.019
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
y lG ++++l++y +A+ ++++ L+l ++
KIAA1043 722 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL 755
//