hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15414633/chunk_1/iprscan-20080501-15414633.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1040
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF09324.1.fs Domain of unknown function (DUF1981)            71.6    1.3e-19   1
PF09324.1.ls Domain of unknown function (DUF1981)            73.6      6e-19   1
PF02985.12.ls HEAT repeat                                     21.5     0.0027   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF09324.1.fs   1/1     866   951 ..     1    88 []    71.6  1.3e-19
PF09324.1.ls   1/1     866   951 ..     1    88 []    73.6    6e-19
PF02985.12.ls   2/2    1159  1195 ..     1    36 []    13.6     0.66

Alignments of top-scoring domains:
PF09324.1.fs: domain 1 of 1, from 866 to 951: score 71.6, E = 1.3e-19
                   *->mkFLekeELanfk.FQkdFLkPFEyImqnsnnqsvevkElvLrClsQ
                      ++F + ++L+++++ Q  +L P+ +    sn  +++++ ++L+C+ Q
    KIAA1040   866    LTFNHDPPLSQNQrLQLLLLNPLKEM---SNINHPDIRLKQLECVLQ 909  

                   milskadnIkSGWktiFgvltlAakdesesivklAfqiidqi<-*
                   +++s++d+++ GW+ ++gv ++ ++d+ es++++Afq+++++   
    KIAA1040   910 ILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLV    951  

PF09324.1.ls: domain 1 of 1, from 866 to 951: score 73.6, E = 6e-19
                   *->mkFLekeELanfk.FQkdFLkPFEyImqnsnnqsvevkElvLrClsQ
                      ++F + ++L+++++ Q  +L P+ +    sn  +++++ ++L+C+ Q
    KIAA1040   866    LTFNHDPPLSQNQrLQLLLLNPLKEM---SNINHPDIRLKQLECVLQ 909  

                   milskadnIkSGWktiFgvltlAakdesesivklAfqiidqi<-*
                   +++s++d+++ GW+ ++gv ++ ++d+ es++++Afq+++++   
    KIAA1040   910 ILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLV    951  

PF02985.12.ls: domain 2 of 2, from 1159 to 1195: score 13.6, E = 0.66
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++ d ll++++++  +++ eV +aA++++ ++++++   
    KIAA1040  1159    SrAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIV    1195 

//