hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15245176/chunk_1/iprscan-20080501-15245176.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1030
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00041.11.ls Fibronectin type III domain                     18.1     0.0023   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00041.11.ls   1/1      29   112 ..     1    84 []    18.1   0.0023

Alignments of top-scoring domains:
PF00041.11.ls: domain 1 of 1, from 29 to 112: score 18.1, E = 0.0023
                   *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge.
                        +P+ l + ++t   + lsW pP + + pi++Y  + R     +  
    KIAA1030    29    VTPPRCL-IANRTQQGVLLSWLPPAnHSFPIDRYIMEFR---VAERw 71   

                   .wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-*
                   +     +pgt+ ++  ++L  +t Y++rV Av ++  +++S   
    KIAA1030    72 eLLDDGIPGTEGEFFAKDLSQDTWYEFRVLAVMQDLiSEPS    112  

//