# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh00432.fasta.huge -Q ../query/KIAA1030.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1030, 763 aa
 vs ./tmplib.24314 library

1986742 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 11.7478+/- 0.012; mu= -13.3144+/- 0.809
 mean_var=598.8120+/-142.729, 0's: 0 Z-trim: 13  B-trim: 8 in 1/39
 Lambda= 0.052412

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1355  ( 1189 res)   fj01564                    (1189)  482 51.8 4.8e-07


>>KIAA1355  ( 1189 res)   fj01564                         (1189 aa)
 initn: 553 init1: 155 opt: 482  Z-score: 218.4  bits: 51.8 E(): 4.8e-07
Smith-Waterman score: 626;  29.329% identity (51.767% similar) in 566 aa overlap (1-553:599-1091)

                                             10        20          
KIAA10                               KLGTSAFSEVVTVNTLAFPITTPEPLVL--
                                     :::.. :::.:     ..: :   : .   
KIAA13 SLAVPVGAAHLLVPGLQPHTQYQFSVLAQNKLGSGPFSEIVLSAPEGLPTTPAAPGLPPT
      570       580       590       600       610       620        

            30        40        50        60        70         80  
KIAA10 -----VTPPRCLIANRTQQGVLLSWLPPANHSFPIDRYIMEFRVAER-WELLDDGIPGTE
            ..::: :.: :: .:::: : ::      .: :..: : . . ::.:: .. :::
KIAA13 EIPPPLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTE
      630       640       650       660       670       680        

             90       100       110       120         130       140
KIAA10 GEFFAKDLSQDTWYEFRVLAVMQDLISEPSNIAGVSST--DIFPQPDLTEDGLARPVLAG
        :...  : .:. ::::..:   ...:.::: :.::..  ...:.       : .:::::
KIAA13 TELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLEVYPSRTQLPGLLPQPVLAG
      690       700       710       720       730       740        

              150       160         170        180       190       
KIAA10 IVATICFLAAAILFSTLAACFVNKQR--KRKLKR-KKDPPLSITHCRKSLESPLSSGKVS
       .:. .:::..:.: : ::.:..:..:  .:. :: ..:::: ..   ::  .: . :. :
KIAA13 VVGGVCFLGVAVLVSILAGCLLNRRRAARRRRKRLRQDPPLIFSPTGKS-AAPSALGSGS
      750       760       770       780       790        800       

       200       210       220       230       240       250       
KIAA10 PESIRTLRAPSESSDDQGQPAAKRMLSPTREKELSLYKKTKRAISSKKYSVAKAEAEAEA
       :.:.  :.        ::.:.      :. .. : :.     . : .          ...
KIAA13 PDSVAKLKL-------QGSPV------PSLRQSL-LWGDPAGTPSPHP-----DPPSSRG
       810              820              830       840             

       260       270       280       290       300       310       
KIAA10 TTPIELISRGPDGRFVMDPAEMEPSLKSRRIEGFPFAEETDMYPEFRQSDEENEDPLVPT
         :.: : ::::::::: :.   :. .: : .. : .    .   :  :.        : 
KIAA13 PLPLEPICRGPDGRFVMGPTVAAPQERSGREQAEPRTPAQRLARSFDCSSSSPSGAPQPL
      850       860       870       880       890       900        

       320       330       340       350       360       370       
KIAA10 SVAALKSQLTPLSSSQESYLPPPAYSPRFQPRGLEGPGGLEGRLQATGQARPPAPRPFHH
        .     ...:..       :::: .:   :  : ::: :   :.       :  : .. 
KIAA13 CIE----DISPVA-------PPPA-AP---PSPLPGPGPLLQYLSL------PFFREMNV
      910                  920           930             940       

       380       390       400       410       420       430       
KIAA10 GQYYGYLSSSSPGEVEPPPFYVPEVGSPLSSVMSSPPLPTEGPFGHPTIPEENGENASNS
          .  :   ::.    :: :.     : :: . ::  :       :. :.:        
KIAA13 DGDWPPLEEPSPAA---PPDYMDTRRCPTSSFLRSPETP-------PVSPRE--------
       950       960          970       980                        

       440       450       460       470       480       490       
KIAA10 TLPLTQTPTGGRSPEPWGRPEFPFGGLETPAMMFPHQLPPCDVPESLQPKAGLPRGLPPT
       .:: . . .:. . ::   :   ..       ..:  ::   .:..   . .  ::   .
KIAA13 SLPGAVVGAGA-TAEP---PYTALADWTLRERLLPGLLPA--APRGSLTSQSSGRG-SAS
     990      1000          1010      1020        1030       1040  

       500       510       520       530       540       550       
KIAA10 SLQVPAAYPGILSLEAPKGWAGKSPGRGPVPAPPAAKWQDRPMQPLVSQGQLRHTSQGMG
        :. :.. :.     :  .. . .::     :    .:  :  . .:. .. :.::    
KIAA13 FLRPPSTAPS-----AGGSYLSPAPGDTSSWASGPERWPRR--EHVVTVSKRRNTSVDEN
           1050           1060      1070        1080      1090     

       560       570       580       590       600       610       
KIAA10 IPVLPYPEPAEPGAHGGPSTFGLDTRWYEPQPRPRPSPRQARRAEPSLHQVVLQPSRLSP
                                                                   
KIAA13 YEWDSEFPGDMELLETLHLGLASSRLRPEAEPELGVKTPEEGCLLNTAHVTGPEARCAAL
        1100      1110      1120      1130      1140      1150     




763 residues in 1 query   sequences
1986742 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:06:27 2008 done: Thu Dec 18 15:06:28 2008
 Total Scan time:  0.590 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]