hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15160380/chunk_1/iprscan-20080501-15160380.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1025 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06333.3.ls TRAP240 1540.8 0 1 PF06333.3.fs TRAP240 1538.9 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06333.3.fs 1/1 1015 1612 .. 1 680 [] 1538.9 0 PF06333.3.ls 1/1 1015 1612 .. 1 680 [] 1540.8 0 Alignments of top-scoring domains: PF06333.3.fs: domain 1 of 1, from 1015 to 1612: score 1538.9, E = 0 *->PmdNvdDvSmlsSqDivRmLlslQPvLQDAiqKKrtggtwsKDASis P++Nv+D+SmlsSqD+vRmLlslQP+LQDAiqKKrtg+tw+ ++ KIAA1025 1015 PHSNVLDISMLSSQDVVRMLLSLQPFLQDAIQKKRTGRTWE----NI 1057 ttVsGPLTWqQFHklAGRasYgtnLINQNYEspEPLPIPtilVGYdkDwL ++V+GPLTWqQFHk+AGR++Yg++ EspEPLPIPt+lVGYdkD+L KIAA1025 1058 QHVQGPLTWQQFHKMAGRGTYGSE------ESPEPLPIPTLLVGYDKDFL 1101 evsPfsipfWdkllLEPYspkRDvaYvVlCPdNEAllngaksFFRDLSai ++sPfs+pfW++llL+PY+++RDvaY+V+CP+NEAll+gak+FFRDLSa+ KIAA1025 1102 TISPFSLPFWERLLLDPYGGHRDVAYIVVCPENEALLEGAKTFFRDLSAV 1151 YEmCrLGqHkPiqklLrDGilqVGqaaaakladslvtewfsQlqsgqenq YEmCrLGqHkPi+k+LrDGi++VG+++a+kl+d+lv+ewf+Q++sg+en+ KIAA1025 1152 YEMCRLGQHKPICKVLRDGIMRVGKTVAQKLTDELVSEWFNQPWSGEEND 1201 alaeqlkrYAqacrhqLAPYLAalqlDSSLLypPdLvaPtsqsYytPPaa +++ +lk+YAq+crh+LAPYLA+lqlDSSLL+pP+ Y+tPPaa KIAA1025 1202 NHS-RLKLYAQVCRHHLAPYLATLQLDSSLLIPPK--------YQTPPAA 1242 agsgaantefgplassnSslltvtsGvaisttviqaGsyLkelStssSen a+++a+++++gpla+++S+++ +aGs+++++S+ssS+n KIAA1025 1243 AQGQATPGNAGPLAPNGSAAP-------------PAGSAFNPTSNSSSTN 1279 nclvLYIVNPFSglSgisLPnqnqnqnqNSnsapstspQvqtvsssGFsn ++++ S++Sg+s+P+ +++S+sap++s Q++t+sssGFs+ KIAA1025 1280 PAAS-------SSASGSSVPP-----VSSSASAPGIS-QISTTSSSGFSG 1316 kikGQtqtnedisairtsGviGkssCFQTIVRDttpgQSlSITIQtkPDv +++GQ++++++isa+rt+G+iG+++ Dt+pgQS+S Q+++D+ KIAA1025 1317 SVGGQNPSTGGISADRTQGNIGCGG-------DTDPGQSSS---QPSQDG 1356 iEsillrDklGIPtsgesaeSvinKCRRISTISPpAiViYmNNvnPFtye +Es+++r+++GIPt+++sa+S+++ PpA+ViYm v+PFty KIAA1025 1357 QESVTERERIGIPTEPDSADSHAH---------PPAVVIYM--VDPFTY- 1394 nanessnssslWllaLlRCyaEmLkiLPdhvrSsvsiqIipcqsvlqstk +a+e+s+s+++Wll+L+RCy+EmL++LP+h+r+s+++qI+pcq++lq++k KIAA1025 1395 AAEEDSTSGNFWLLSLMRCYTEMLDNLPEHMRNSFILQIVPCQYMLQTMK 1444 tenrktysQelkSLAfsiFsQCRRpLptsqqvKsLTGFGpaatmEttLkv +e +++y+Q+lkS+Afs+++QCRRpLpt++++KsLTGFGpaa++E+tLk+ KIAA1025 1445 DE-QVFYIQYLKSMAFSVYCQCRRPLPTQIHIKSLTGFGPAASIEMTLKN 1493 pdrPslrpikLYtpPFiLAPvkdkQtelDFSRSAGetfGeaeQkYnVlfv p+rPs pi+LY+pPFiLAP+kdkQtel GetfGea+QkYnVlfv KIAA1025 1494 PERPS--PIQLYSPPFILAPIKDKQTEL------GETFGEASQKYNVLFV 1535 gYCLShDqrWlLAtctDerGELLEtcvINIavPNRARRsKisARyiWKDg gYCLShDqrWlLA+ctD++GELLEtcv+NIa+PNR+RRsK+sAR+i g KIAA1025 1536 GYCLSHDQRWLLASCTDLHGELLETCVVNIALPNRSRRSKVSARKI---G 1582 LqKLWefLTEiiGlvslsSqPWRVVIGRlGRIG<-* LqKLWe+ +iG+v+++S+PWRVVIGRlGR+G KIAA1025 1583 LQKLWEW---CIGIVQMTSLPWRVVIGRLGRLG 1612 PF06333.3.ls: domain 1 of 1, from 1015 to 1612: score 1540.8, E = 0 *->PmdNvdDvSmlsSqDivRmLlslQPvLQDAiqKKrtggtwsKDASis P++Nv+D+SmlsSqD+vRmLlslQP+LQDAiqKKrtg+tw+ ++ KIAA1025 1015 PHSNVLDISMLSSQDVVRMLLSLQPFLQDAIQKKRTGRTWE----NI 1057 ttVsGPLTWqQFHklAGRasYgtnLINQNYEspEPLPIPtilVGYdkDwL ++V+GPLTWqQFHk+AGR++Yg++ EspEPLPIPt+lVGYdkD+L KIAA1025 1058 QHVQGPLTWQQFHKMAGRGTYGSE------ESPEPLPIPTLLVGYDKDFL 1101 evsPfsipfWdkllLEPYspkRDvaYvVlCPdNEAllngaksFFRDLSai ++sPfs+pfW++llL+PY+++RDvaY+V+CP+NEAll+gak+FFRDLSa+ KIAA1025 1102 TISPFSLPFWERLLLDPYGGHRDVAYIVVCPENEALLEGAKTFFRDLSAV 1151 YEmCrLGqHkPiqklLrDGilqVGqaaaakladslvtewfsQlqsgqenq YEmCrLGqHkPi+k+LrDGi++VG+++a+kl+d+lv+ewf+Q++sg+en+ KIAA1025 1152 YEMCRLGQHKPICKVLRDGIMRVGKTVAQKLTDELVSEWFNQPWSGEEND 1201 alaeqlkrYAqacrhqLAPYLAalqlDSSLLypPdLvaPtsqsYytPPaa +++ +lk+YAq+crh+LAPYLA+lqlDSSLL+pP+ Y+tPPaa KIAA1025 1202 NHS-RLKLYAQVCRHHLAPYLATLQLDSSLLIPPK--------YQTPPAA 1242 agsgaantefgplassnSslltvtsGvaisttviqaGsyLkelStssSen a+++a+++++gpla+++S+++ +aGs+++++S+ssS+n KIAA1025 1243 AQGQATPGNAGPLAPNGSAAP-------------PAGSAFNPTSNSSSTN 1279 nclvLYIVNPFSglSgisLPnqnqnqnqNSnsapstspQvqtvsssGFsn ++++ S++Sg+s+P+ +++S+sap++s Q++t+sssGFs+ KIAA1025 1280 PAAS-------SSASGSSVPP-----VSSSASAPGIS-QISTTSSSGFSG 1316 kikGQtqtnedisairtsGviGkssCFQTIVRDttpgQSlSITIQtkPDv +++GQ++++++isa+rt+G+iG+++ Dt+pgQS+S Q+++D+ KIAA1025 1317 SVGGQNPSTGGISADRTQGNIGCGG-------DTDPGQSSS---QPSQDG 1356 iEsillrDklGIPtsgesaeSvinKCRRISTISPpAiViYmNNvnPFtye +Es+++r+++GIPt+++sa+S+++ PpA+ViYm v+PFty KIAA1025 1357 QESVTERERIGIPTEPDSADSHAH---------PPAVVIYM--VDPFTY- 1394 nanessnssslWllaLlRCyaEmLkiLPdhvrSsvsiqIipcqsvlqstk +a+e+s+s+++Wll+L+RCy+EmL++LP+h+r+s+++qI+pcq++lq++k KIAA1025 1395 AAEEDSTSGNFWLLSLMRCYTEMLDNLPEHMRNSFILQIVPCQYMLQTMK 1444 tenrktysQelkSLAfsiFsQCRRpLptsqqvKsLTGFGpaatmEttLkv +e +++y+Q+lkS+Afs+++QCRRpLpt++++KsLTGFGpaa++E+tLk+ KIAA1025 1445 DE-QVFYIQYLKSMAFSVYCQCRRPLPTQIHIKSLTGFGPAASIEMTLKN 1493 pdrPslrpikLYtpPFiLAPvkdkQtelDFSRSAGetfGeaeQkYnVlfv p+rPs pi+LY+pPFiLAP+kdkQtel GetfGea+QkYnVlfv KIAA1025 1494 PERPS--PIQLYSPPFILAPIKDKQTEL------GETFGEASQKYNVLFV 1535 gYCLShDqrWlLAtctDerGELLEtcvINIavPNRARRsKisARyiWKDg gYCLShDqrWlLA+ctD++GELLEtcv+NIa+PNR+RRsK+sAR+i g KIAA1025 1536 GYCLSHDQRWLLASCTDLHGELLETCVVNIALPNRSRRSKVSARKI---G 1582 LqKLWefLTEiiGlvslsSqPWRVVIGRlGRIG<-* LqKLWe+ +iG+v+++S+PWRVVIGRlGR+G KIAA1025 1583 LQKLWEW---CIGIVQMTSLPWRVVIGRLGRLG 1612 //