hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15142620/chunk_1/iprscan-20080501-15142620.nocrc
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Query sequence: KIAA1024
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06789.3.ls Uncharacterised protein family (UPF0258)       509.8   2.9e-150   1
PF06789.3.fs Uncharacterised protein family (UPF0258)       507.8   1.1e-149   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06789.3.fs   1/1     759   917 .]     1   159 []   507.8 1.1e-149
PF06789.3.ls   1/1     759   917 .]     1   159 []   509.8 2.9e-150

Alignments of top-scoring domains:
PF06789.3.fs: domain 1 of 1, from 759 to 917: score 507.8, E = 1.1e-149
                   *->KDWHRKsKEADRqYDiPPqHRLPKqPKDGFLvEqvFsPHPYPasLKa
                      KDWHRKsKEADRqYDiPPqHRLPKqPKDGFLvEqvFsPHPYPasLKa
    KIAA1024   759    KDWHRKSKEADRQYDIPPQHRLPKQPKDGFLVEQVFSPHPYPASLKA 805  

                   HmKsnPLYtDmRLtELAEvKRGqPsWtiEEYARnaGDKGKLtALDLqtqE
                   HmKsnPLYtDmRLtELAEvKRGqPsWtiEEYARnaGDKGKLtALDLqtqE
    KIAA1024   806 HMKSNPLYTDMRLTELAEVKRGQPSWTIEEYARNAGDKGKLTALDLQTQE 855  

                   sLnPnnLEYWmEDiYtPGYDsLLKRKEAEFRRAKvCKiAALiaAAACtvi
                   sLnPnnLEYWmEDiYtPGYDsLLKRKEAEFRRAKvCKiAALiaAAACtvi
    KIAA1024   856 SLNPNNLEYWMEDIYTPGYDSLLKRKEAEFRRAKVCKIAALIAAAACTVI 905  

                   LvivvPiCtmKs<-*
                   LvivvPiCtmKs   
    KIAA1024   906 LVIVVPICTMKS    917  

PF06789.3.ls: domain 1 of 1, from 759 to 917: score 509.8, E = 2.9e-150
                   *->KDWHRKsKEADRqYDiPPqHRLPKqPKDGFLvEqvFsPHPYPasLKa
                      KDWHRKsKEADRqYDiPPqHRLPKqPKDGFLvEqvFsPHPYPasLKa
    KIAA1024   759    KDWHRKSKEADRQYDIPPQHRLPKQPKDGFLVEQVFSPHPYPASLKA 805  

                   HmKsnPLYtDmRLtELAEvKRGqPsWtiEEYARnaGDKGKLtALDLqtqE
                   HmKsnPLYtDmRLtELAEvKRGqPsWtiEEYARnaGDKGKLtALDLqtqE
    KIAA1024   806 HMKSNPLYTDMRLTELAEVKRGQPSWTIEEYARNAGDKGKLTALDLQTQE 855  

                   sLnPnnLEYWmEDiYtPGYDsLLKRKEAEFRRAKvCKiAALiaAAACtvi
                   sLnPnnLEYWmEDiYtPGYDsLLKRKEAEFRRAKvCKiAALiaAAACtvi
    KIAA1024   856 SLNPNNLEYWMEDIYTPGYDSLLKRKEAEFRRAKVCKIAALIAAAACTVI 905  

                   LvivvPiCtmKs<-*
                   LvivvPiCtmKs   
    KIAA1024   906 LVIVVPICTMKS    917  

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