hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15073777/chunk_1/iprscan-20080501-15073777.nocrc
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Query sequence: KIAA1020
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 140.9    1.3e-37   5
SM00225                                                  90.7    1.8e-22   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      69   166 ..     1   114 []    90.7  1.8e-22
SM00355      1/5     465   487 ..     1    23 []    20.2      0.3
SM00355      2/5     528   550 ..     1    23 []    28.4  0.00096
SM00355      3/5     556   578 ..     1    23 []    33.6  2.7e-05
SM00355      4/5     584   606 ..     1    23 []    31.3  0.00014
SM00355      5/5     612   634 ..     1    23 []    27.4   0.0019

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 69 to 166: score 90.7, E = 1.8e-22
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv+++v++          +f+a  Hk vLaa+   S yFk+l +++
    KIAA1020    69    CDVIIMVEN---------SIFRA--HKNVLAAS---SIYFKSLVLHd 101  

                   ..ieldDeallievspeaFralLnflYt.kldlpeed.venveelLelAd
                   + i+ld +    +vs ++F+ +L+f+Yt+kl +++++ + n   lL +A+
    KIAA1020   102 nlINLDTD----MVSSTVFQQILDFIYTgKLLPSDQPaEPNFSTLLTAAS 147  

                   fldSYGqip.lvelCeefllknl<-*
                   +l    q+p+l+ lC ++l++     
    KIAA1020   148 YL----QLPeLAALCRRKLKRAG    166  

SM00355: domain 1 of 5, from 465 to 487: score 20.2, E = 0.3
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C   C k f+s ++L+ H+ +H   
    KIAA1020   465    YVCIP-CAKGFPSSeQLNAHVETH    487  

SM00355: domain 2 of 5, from 528 to 550: score 28.4, E = 0.00096
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C k+++++  L++H ++H   
    KIAA1020   528    FKCSV-CEKTYKDPaTLRQHEKTH    550  

SM00355: domain 3 of 5, from 556 to 578: score 33.6, E = 2.7e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i Cgk f++++ ++rHmr+H   
    KIAA1020   556    FPCNI-CGKMFTQRgTMTRHMRSH    578  

SM00355: domain 4 of 5, from 584 to 606: score 31.3, E = 0.00014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cg++f+++  L++HmrvH   
    KIAA1020   584    FACDE-CGMRFTRQyRLTEHMRVH    606  

SM00355: domain 5 of 5, from 612 to 634: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg +f+++++L+ H+r+H   
    KIAA1020   612    YECQL-CGGKFTQQrNLISHLRMH    634  

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