hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15073777/chunk_1/iprscan-20080501-15073777.nocrc
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Query sequence: KIAA1020
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         144.0    3.8e-40   5
PF00096.16.fs Zinc finger, C2H2 type                         134.1    3.5e-37   5
PF00651.21.ls BTB/POZ domain                                 108.2    2.2e-29   1
PF00651.21.fs BTB/POZ domain                                 106.4    3.4e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      59   166 ..     1   135 []   106.4  3.4e-29
PF00651.21.ls   1/1      59   166 ..     1   135 []   108.2  2.2e-29
PF00096.16.ls   2/5     528   550 ..     1    24 []    31.9  2.1e-06
PF00096.16.fs   2/5     528   550 ..     1    24 []    29.9  3.4e-06
PF00096.16.ls   3/5     556   578 ..     1    24 []    37.1  5.5e-08
PF00096.16.fs   3/5     556   578 ..     1    24 []    35.2  1.6e-07
PF00096.16.fs   4/5     584   606 ..     1    24 []    30.2  2.8e-06
PF00096.16.ls   4/5     584   606 ..     1    24 []    32.2  1.7e-06
PF00096.16.fs   5/5     612   634 ..     1    24 []    27.0  1.8e-05
PF00096.16.ls   5/5     612   634 ..     1    24 []    29.0  1.6e-05

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 59 to 166: score 106.4, E = 3.4e-29
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln++r +g+lcDV+++v+        +  f+AHK vLaa+S YFk+l
    KIAA1020    59    LNQQRTKGFLCDVIIMVE--------NSIFRAHKNVLAASSIYFKSL 97   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                    +++          + +  ++ + vs ++f+++L+fiYtg+l ++  +  
    KIAA1020    98 VLHD----------NLI-NLDTDMVSSTVFQQILDFIYTGKLLPSDQP-- 134  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                          e   + L +Aa++lq+p l  +C ++l++     
    KIAA1020   135 ------AEPNFSTLLTAASYLQLPELAALCRRKLKRAG    166  

PF00651.21.ls: domain 1 of 1, from 59 to 166: score 108.2, E = 2.2e-29
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln++r +g+lcDV+++v+        +  f+AHK vLaa+S YFk+l
    KIAA1020    59    LNQQRTKGFLCDVIIMVE--------NSIFRAHKNVLAASSIYFKSL 97   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                    +++          + +  ++ + vs ++f+++L+fiYtg+l ++  +  
    KIAA1020    98 VLHD----------NLI-NLDTDMVSSTVFQQILDFIYTGKLLPSDQP-- 134  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                          e   + L +Aa++lq+p l  +C ++l++     
    KIAA1020   135 ------AEPNFSTLLTAASYLQLPELAALCRRKLKRAG    166  

PF00096.16.ls: domain 2 of 5, from 528 to 550: score 31.9, E = 2.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C k+++++++L++H +tH   
    KIAA1020   528    FKCS-VCEKTYKDPATLRQHEKTH    550  

PF00096.16.fs: domain 2 of 5, from 528 to 550: score 29.9, E = 3.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C k+++++++L++H +tH   
    KIAA1020   528    FKCS-VCEKTYKDPATLRQHEKTH    550  

PF00096.16.ls: domain 3 of 5, from 556 to 578: score 37.1, E = 5.5e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cgk+F+++++++rH+r+H   
    KIAA1020   556    FPCN-ICGKMFTQRGTMTRHMRSH    578  

PF00096.16.fs: domain 3 of 5, from 556 to 578: score 35.2, E = 1.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cgk+F+++++++rH+r+H   
    KIAA1020   556    FPCN-ICGKMFTQRGTMTRHMRSH    578  

PF00096.16.fs: domain 4 of 5, from 584 to 606: score 30.2, E = 2.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cg +F+r++ L+ H+r+H   
    KIAA1020   584    FACD-ECGMRFTRQYRLTEHMRVH    606  

PF00096.16.ls: domain 4 of 5, from 584 to 606: score 32.2, E = 1.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cg +F+r++ L+ H+r+H   
    KIAA1020   584    FACD-ECGMRFTRQYRLTEHMRVH    606  

PF00096.16.fs: domain 5 of 5, from 612 to 634: score 27.0, E = 1.8e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cg +F+++ nL +Hlr+H   
    KIAA1020   612    YECQ-LCGGKFTQQRNLISHLRMH    634  

PF00096.16.ls: domain 5 of 5, from 612 to 634: score 29.0, E = 1.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cg +F+++ nL +Hlr+H   
    KIAA1020   612    YECQ-LCGGKFTQQRNLISHLRMH    634  

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