# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk07512s1.fasta.huge -Q ../query/KIAA1017.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1017, 1095 aa vs ./tmplib.24314 library 1986410 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.3938+/-0.00536; mu= 8.9013+/- 0.361 mean_var=116.1682+/-28.217, 0's: 0 Z-trim: 4 B-trim: 135 in 1/39 Lambda= 0.118996 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0329 ( 1417 res) hg00872 (1417) 384 77.8 1.2e-14 KIAA0297 ( 1271 res) hf00325 (1271) 289 61.5 8.8e-10 >>KIAA0329 ( 1417 res) hg00872 (1417 aa) initn: 246 init1: 94 opt: 384 Z-score: 355.0 bits: 77.8 E(): 1.2e-14 Smith-Waterman score: 398; 29.565% identity (58.841% similar) in 345 aa overlap (4-335:45-372) 10 20 30 KIAA10 CACTSIAVSRKWLALGSSGGGLHLIQKEGWKHR :.. .. ..:.::: : :.: .. . : KIAA03 TFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMR 20 30 40 50 60 70 40 50 60 70 80 KIAA10 L--FLSHREG-AISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMY---VSSEH : .. :. .. .. :. :: ::..:..: :.:..: . :. .:. :.. : KIAA03 KYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIH 80 90 100 110 120 130 90 100 110 120 130 140 KIAA10 KGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQ :. .::: :. ...: :: ::. .:. .. . : . : .:: KIAA03 KNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG--------LCNSQLVLEEPSSIVQ 140 150 160 170 180 150 160 170 180 190 200 KIAA10 LDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCA ::: . ::.:.: ::.: ::... .::.. : :..::::.:: :. .. : : . KIAA03 LDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YAS 190 200 210 220 230 240 210 220 230 240 250 260 KIAA10 RPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS ::: :.:... : : .: .: .. : .. .:. . ..: :: .: .: KIAA03 RPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPNSGSCSLPERHLGLVS 250 260 270 280 290 270 280 290 300 310 320 KIAA10 ----EHCVLTWTERGIYIFIPQNVQVLLWSEVK-DIQDVAVCRNELFCLHLNGKVSHLSL : ::.:.: .::.. : .. : . :: .:. .::.: :. . .. ..: KIAA03 CFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS- 300 310 320 330 340 350 330 340 350 360 370 380 KIAA10 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI : . . .: :: KIAA03 -SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSS 360 370 380 390 400 410 >>KIAA0297 ( 1271 res) hf00325 (1271 aa) initn: 192 init1: 94 opt: 289 Z-score: 267.5 bits: 61.5 E(): 8.8e-10 Smith-Waterman score: 289; 30.000% identity (57.083% similar) in 240 aa overlap (103-335:1-226) 80 90 100 110 120 130 KIAA10 ERRGKPEQMYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVM ..: :: ::. .:. .. . KIAA02 KLFSGDDKGKIVYSSLDLDQG--------L 10 20 140 150 160 170 180 190 KIAA10 FPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGACFF : . : .::::: . ::.:.: ::.: ::... .::.. : :..::::. KIAA02 CNSQLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFI 30 40 50 60 70 80 200 210 220 230 240 250 KIAA10 PGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTA :: :. .. : : .::: :.:... : : .: .: .. : .. .:. . KIAA02 PGLCKQSDLTL-YASRPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPN 90 100 110 120 130 260 270 280 290 300 KIAA10 GSSQSLSFPKLLHLS----EHCVLTWTERGIYIFIPQNVQVLLWSEVK-DIQDVAVCRNE ..: :: .: .: : ::.:.: .::.. : .. : . :: .:. .:: KIAA02 SGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENE 140 150 160 170 180 190 310 320 330 340 350 360 KIAA10 LFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLE .: :. . .. ..: : . . .: :: KIAA02 IFFLKGDRNIIRIS--SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGS 200 210 220 230 240 250 1095 residues in 1 query sequences 1986410 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:05:56 2008 done: Thu Dec 18 15:05:57 2008 Total Scan time: 0.720 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]