hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15004205/chunk_1/iprscan-20080501-15004205.nocrc
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Query sequence: KIAA1016
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  75.9    5.1e-18   5
SM00033                                                  60.0    2.9e-13   1
SM00364                                                  49.3    5.1e-10   4

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/5     184   206 ..     1    24 []    10.5       21
SM00364     1/4     207   226 ..     1    20 []    15.0      6.7
SM00369     2/5     207   230 ..     1    24 []    25.3   0.0084
SM00364     2/4     232   248 ..     1    20 []     9.6       34
SM00369     3/5     252   274 ..     1    24 []    11.5       17
SM00364     3/4     252   271 ..     1    20 []    10.6       26
SM00364     4/4     275   294 ..     1    20 []    14.1        9
SM00369     4/5     275   298 ..     1    24 []    17.6      1.8
SM00369     5/5     320   343 ..     1    24 []    10.9       19
SM00033     1/1     643   752 ..     1   100 []    60.0  2.9e-13

Alignments of top-scoring domains:
SM00369: domain 1 of 5, from 184 to 206: score 10.5, E = 21
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       ++L+ L+L +N ++ +P+ +  +   
    KIAA1016   184    FVSLEILNLYHNCIRVIPEAI-VN    206  

SM00364: domain 1 of 4, from 207 to 226: score 15.0, E = 6.7
                   *->PpsLkeLnvsnNrLteLPeL<-*
                       + L++Ln s+N+L+ LP+    
    KIAA1016   207    LQMLTYLNLSRNQLSALPAC    226  

SM00369: domain 2 of 5, from 207 to 230: score 25.3, E = 0.0084
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L  L+ L+Ls+NqL++LP+ +++    
    KIAA1016   207    LQMLTYLNLSRNQLSALPACLCGL    230  

SM00364: domain 2 of 4, from 232 to 248: score 9.6, E = 34
                   *->PpsLkeLnvsnNrLteLPeL<-*
                         Lk L +snN+L +LPe    
    KIAA1016   232    ---LKVLIASNNKLGSLPEE    248  

SM00369: domain 3 of 5, from 252 to 274: score 11.5, E = 17
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L eLd s N +t+LP+++ +    
    KIAA1016   252    LKQLMELDVSCNEITALPQQI-GQ    274  

SM00364: domain 3 of 4, from 252 to 271: score 10.6, E = 26
                   *->PpsLkeLnvsnNrLteLPeL<-*
                        +L eL+vs+N++t LP+    
    KIAA1016   252    LKQLMELDVSCNEITALPQQ    271  

SM00364: domain 4 of 4, from 275 to 294: score 14.1, E = 9
                   *->PpsLkeLnvsnNrLteLPeL<-*
                        sL+eLnv++N L+ LP+    
    KIAA1016   275    LKSLRELNVRRNYLKVLPQE    294  

SM00369: domain 4 of 5, from 275 to 298: score 17.6, E = 1.8
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +LreL+  +N L+ LP+++ +    
    KIAA1016   275    LKSLRELNVRRNYLKVLPQELVDL    298  

SM00369: domain 5 of 5, from 320 to 343: score 10.9, E = 19
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      + +L++L L+nN L+s P++++     
    KIAA1016   320    MKQLQVLLLENNPLQSPPAQICTK    343  

SM00033: domain 1 of 1, from 643 to 752: score 60.0, E = 2.9e-13
                   *->eeeallrWinsll.......kvtnfssdlkDGvvLckLlnslsPags
                      ee++l++ +++ ++ + + +  +++ ++l+DGvvLc+L+n+++P +s
    KIAA1016   643    EEKELVEQLRESIemrlkvsLHEDLGAALMDGVVLCHLVNHIRP-RS 688  

                   vdkkk..........rfkkleNinlalsfaeklgafLGvgkvvlfdpeDl
                   v  ++ +++  ++ ++ k++ N++++l++++kl    Gv++ +l+ p+D+
    KIAA1016   689 VASIHvpspavpklsMAKCRRNVENFLEACRKL----GVPEADLCSPCDI 734  

                   vegnenkklilgviwtLirl<-*
                        + + i + + tL +l   
    KIAA1016   735 LQL--DFRHIRKTVDTLLAL    752  

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