hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14553994/chunk_1/iprscan-20080501-14553994.nocrc
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Query sequence: KIAA1013
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00373.8.fs FERM domain (Band 4.1 family)                   75.0    2.5e-23   2
PF00373.8.ls FERM domain (Band 4.1 family)                   73.1    8.3e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00373.8.fs   1/2      89   220 ..     1   136 [.    59.7  1.5e-18
PF00373.8.ls   1/1      89   288 ..     1   210 []    73.1  8.3e-19
PF00373.8.fs   2/2     251   288 ..   173   210 .]    15.3   0.0001

Alignments of top-scoring domains:
PF00373.8.fs: domain 1 of 2, from 89 to 220: score 59.7, E = 1.5e-18
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c v+llD+   e+ v++k +   LLd+V  h +l Ek+YFG  ++D 
    KIAA1013    89    CQVHLLDDRRLELLVQPKLLARELLDLVASHFNLKEKEYFGITFID- 134  

                   DnsskdsptWLdpsKkirkQdv.kkeePytLhFRvKFYpeDvpneLrqei
                       +++ +WL ++  ++++d++kk  P  LhF v+FY+e     L +  
    KIAA1013   135 ---DTGQQNWLQLDHRVLDHDLpKKPGPTILHFAVRFYIES-ISFLKDKT 180  

                   TrylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDY<-*
                   T  lffL +k     G + + +et   LA +  Q   GDY   
    KIAA1013   181 TVELFFLNAKACVHKGQIEVESETIFKLAAFILQEAKGDY    220  

PF00373.8.ls: domain 1 of 1, from 89 to 288: score 73.1, E = 8.3e-19
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c v+llD+   e+ v++k +   LLd+V  h +l Ek+YFG  ++D 
    KIAA1013    89    CQVHLLDDRRLELLVQPKLLARELLDLVASHFNLKEKEYFGITFID- 134  

                   DnsskdsptWLdpsKkirkQdv.kkeePytLhFRvKFYpeDvpneLrqei
                       +++ +WL ++  ++++d++kk  P  LhF v+FY+e     L +  
    KIAA1013   135 ---DTGQQNWLQLDHRVLDHDLpKKPGPTILHFAVRFYIES-ISFLKDKT 180  

                   TrylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRt
                   T  lffL +k     G + + +et   LA +  Q   GDY + ++ +   
    KIAA1013   181 TVELFFLNAKACVHKGQIEVESETIFKLAAFILQEAKGDYTSDENARK-- 228  

                   CLCYLsdekllPqRVlnqkqltkddf.........EekIaelHkeHrGms
                         d k+lP          ++ ++++++    E+++ e +    G++
    KIAA1013   229 ------DLKTLP-------AFPTKTLqehpslaycEDRVIEHYLKIKGLT 265  

                   pdeAeleYLkiArdLemYGVdff<-*
                   + +A + Y ki   L +YGV ++   
    KIAA1013   266 RGQAVVQYMKIVEALPTYGVHYY    288  

PF00373.8.fs: domain 2 of 2, from 251 to 288: score 15.3, E = 0.0001
                   *->EekIaelHkeHrGmspdeAeleYLkiArdLemYGVdff<-*
                      E+++ e +    G+++ +A + Y ki   L +YGV ++   
    KIAA1013   251    EDRVIEHYLKIKGLTRGQAVVQYMKIVEALPTYGVHYY    288  

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