hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14510231/chunk_1/iprscan-20080501-14510231.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1011 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00435.11.fs Spectrin repeat 155.1 1.2e-45 14 PF00435.11.ls Spectrin repeat 145.1 1.7e-40 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00435.11.ls 1/9 1578 1687 .. 1 111 [] 11.1 0.0049 PF00435.11.ls 2/9 1688 1801 .. 1 111 [] 5.6 0.014 PF00435.11.ls 3/9 1804 1908 .. 1 111 [] 3.6 0.02 PF00435.11.ls 4/9 2551 2653 .. 1 111 [] 21.8 0.00067 PF00435.11.fs 10/14 2656 2767 .. 1 111 [] 29.7 2.6e-08 PF00435.11.ls 5/9 2656 2767 .. 1 111 [] 31.6 2.5e-06 PF00435.11.ls 6/9 2770 2876 .. 1 111 [] 18.9 0.0011 PF00435.11.ls 7/9 2879 2983 .. 1 111 [] 16.3 0.0019 PF00435.11.fs 13/14 3208 3315 .. 1 111 [] 30.6 1.4e-08 PF00435.11.ls 8/9 3208 3315 .. 1 111 [] 32.5 1.3e-06 PF00435.11.ls 9/9 3318 3426 .. 1 111 [] 3.5 0.02 Alignments of top-scoring domains: PF00435.11.ls: domain 1 of 9, from 1578 to 1687: score 11.1, E = 0.0049 *->lllqqFqrdaddlesWiee........kealLssedyegkdleevqa ++l ++rd d+l++W+e ++++ + ke+ L ++ +dl+++++ KIAA1011 1578 KHLLSYNRDSDQLTKWLESsqhtlnywKEQSL---NV-SQDLDTIRS 1620 LlkqlkHkaleaelaahqdrvealninelaekLiideghyaseeiqerle + ++ +e++ a+ ++++L + + ++ +++ l+ KIAA1011 1621 NIN--NFFEFSKEVDEKSSLKTAVI--SIGNQL-LHLKETDTATLRASLA 1665 eLnerWeqLlelaaeRkqkLee<-* + +++W L +++ + ++kL++ KIAA1011 1666 QFEQKWTMLITQLPDIQEKLHQ 1687 PF00435.11.ls: domain 2 of 9, from 1688 to 1801: score 5.6, E = 0.014 *->lllqqF..qrdaddlesWieekealLssedyegkdleevqaLlkql. l+++++++ + + ++ sW++ e + s+ed ++++++ + ++ l+ KIAA1011 1688 LQMEKLpsRKAITEMISWMNNVEHQTSDEDS-VHSPSSASQVKHLLq 1733 kHkaleaelaahqdrvealninelaekL...iideghyaseeiqerleeL kHk+++ e++ q v+ +n + +L++ ++++ y+ e e l e KIAA1011 1734 KHKEFRMEMDYKQWIVDFVN--QSLLQLstcDVESKRYERTEFAEHLGEM 1781 nerWeqLlelaaeRkqkLee<-* n++W +++ ++ ++ q Le+ KIAA1011 1782 NRQWHRVHGMLNRKIQHLEQ 1801 PF00435.11.ls: domain 3 of 9, from 1804 to 1908: score 3.6, E = 0.02 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk + + + ++++ l++W+e +e+ L + + ++++ +vq Ll ++ KIAA1011 1804 ESITESENKIQILNNWLEAQEERLKTLQK-PESVISVQKLLL--DCQ 1847 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq ++e+ la +++l + L +++ + e++ +r++eL +++ + KIAA1011 1848 DIENQLAIKSKALDELK--QSYLTL-ESGAVPLLEDTASRIDELFQKRSS 1894 LlelaaeRkqkLee<-* +l+++ + k + KIAA1011 1895 VLTQVNQLKTSMQS 1908 PF00435.11.ls: domain 4 of 9, from 2551 to 2653: score 21.8, E = 0.00067 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH + + F+ + ++l +W+ ++e+ + ++ d+ +e+++ L+k KIAA1011 2551 NTWVVFNEKNKELCAWLVQMENKVlQTADI--SIEEMIEKLQK---- 2591 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe + ++e++ ++ +l +++++Li ++++ + ei ++l+ +n+rW+ KIAA1011 2592 -DCMEEINLFSENKLQLK--QMGDQLIKASNKSRAAEIDDKLNKINDRWQ 2638 qLlelaaeRkqkLee<-* +L + + +R +kL e KIAA1011 2639 HLFDVIGSRVKKLKE 2653 PF00435.11.fs: domain 10 of 14, from 2656 to 2767: score 29.7, E = 2.6e-08 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH +qq+ ++++ l W+ +e L+ y+ d +e+q l + KIAA1011 2656 AFIQQLDKNMSNLRTWLARIESELsKPVVYDVCDDQEIQKRLA--EQ 2700 kaleaelaahqdrvealninelaekLiideghyas.....eeiqerleeL ++l++++++h ve+++ + + L + ++ ++++++ + iq++ L KIAA1011 2701 QDLQRDIEQHSAGVESVF--NICDVL-LHDSDACAnetecDSIQQTTRSL 2747 nerWeqLlelaaeRkqkLee<-* ++rW +++++ +eR+ k ee KIAA1011 2748 DRRWRNICAMSMERRMKIEE 2767 PF00435.11.ls: domain 5 of 9, from 2656 to 2767: score 31.6, E = 2.5e-06 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH +qq+ ++++ l W+ +e L+ y+ d +e+q l + KIAA1011 2656 AFIQQLDKNMSNLRTWLARIESELsKPVVYDVCDDQEIQKRLA--EQ 2700 kaleaelaahqdrvealninelaekLiideghyas.....eeiqerleeL ++l++++++h ve+++ + + L + ++ ++++++ + iq++ L KIAA1011 2701 QDLQRDIEQHSAGVESVF--NICDVL-LHDSDACAnetecDSIQQTTRSL 2747 nerWeqLlelaaeRkqkLee<-* ++rW +++++ +eR+ k ee KIAA1011 2748 DRRWRNICAMSMERRMKIEE 2767 PF00435.11.ls: domain 6 of 9, from 2770 to 2876: score 18.9, E = 0.0011 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk l+q+F+ d + +e W+ +e+ ++ ++ ++++++ lk +++ KIAA1011 2770 RLWQKFLDDYSRFEDWLKSAERTAACPNSSEVLYTSAKEELK--RFE 2814 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq a+++ + + +++e +n ++ ++L+ ++ +++ ++++++ e n+rW++ KIAA1011 2815 AFQRQIHERLTQLELIN--KQYRRLARENRTDTASRLKQMVHEGNQRWDN 2862 LlelaaeRkqkLee<-* L++++ + ++L+ KIAA1011 2863 LQRRVTAVLRRLRH 2876 PF00435.11.ls: domain 7 of 9, from 2879 to 2983: score 16.3, E = 0.0019 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk ++ ++F + ++ W++e++ +L++ ++ +++++ ++ ++ KIAA1011 2879 NQREEFEGTRESILVWLTEMDLQLTNVEH--FSESDADDKMR--QLN 2921 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq +++ e+ + ++++l ++e+Li+ +++ ++ i++ leeL++ ++ KIAA1011 2922 GFQQEITLNTNKIDQLI--VFGEQLIQKSEPLDAVLIEDELEELHRYCQE 2969 LlelaaeRkqkLee<-* + ++ + +++L KIAA1011 2970 VFGRVSRFHRRLTS 2983 PF00435.11.fs: domain 13 of 14, from 3208 to 3315: score 30.6, E = 1.4e-08 *->lllqqFqrdaddlesWieekealL..ssedyegkdleevqaLlkqlk ++lqq+++d++ ++ W+ ++ea L+ + +++ d++e++ k + KIAA1011 3208 QNLQQLNSDISAITTWLKKTEAELemLKMAKPPSDIQEIELRVK--R 3252 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW ++++ + + ++ v ++n +++ ++ + ++s e+q+rl +L +W KIAA1011 3253 LQEILKAFDTYKALVVSVN--VSSKEF-LQTESPESTELQSRLRQLSLLW 3299 eqLlelaaeRkqkLee<-* e+ + ++++++ L++ KIAA1011 3300 EAAQGAVDSWRGGLRQ 3315 PF00435.11.ls: domain 8 of 9, from 3208 to 3315: score 32.5, E = 1.3e-06 *->lllqqFqrdaddlesWieekealL..ssedyegkdleevqaLlkqlk ++lqq+++d++ ++ W+ ++ea L+ + +++ d++e++ k + KIAA1011 3208 QNLQQLNSDISAITTWLKKTEAELemLKMAKPPSDIQEIELRVK--R 3252 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW ++++ + + ++ v ++n +++ ++ + ++s e+q+rl +L +W KIAA1011 3253 LQEILKAFDTYKALVVSVN--VSSKEF-LQTESPESTELQSRLRQLSLLW 3299 eqLlelaaeRkqkLee<-* e+ + ++++++ L++ KIAA1011 3300 EAAQGAVDSWRGGLRQ 3315 PF00435.11.ls: domain 9 of 9, from 3318 to 3426: score 3.5, E = 0.02 *->lllqqFqrdaddlesWieekealLssedyegkdl.eevqaLlkql.k + q F++ + l++W+ +++ + + d++++++aLl+ + KIAA1011 3318 MQCQDFHQLSQNLLLWLASAKNRR-QKAH-VTDPkADPRALLECRrE 3362 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW + +le+el +q++v+ l+ e+ + L i +++++ e +e++ ++++ KIAA1011 3363 LMQLEKELVERQPQVDMLQ--EISNSLLIKGHGEDCIEAEEKVHVIEKKL 3410 eqLlelaaeRkqkLee<-* +qL+e++ + +L+ KIAA1011 3411 KQLREQVSQDLMALQG 3426 //