# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk10084.fasta.huge -Q ../query/KIAA1006.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1006, 1221 aa
 vs ./tmplib.24314 library

1986284 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.2416+/-0.00552; mu= 17.4859+/- 0.376
 mean_var=121.3566+/-29.044, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.116424

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1645  ( 386 res)   fg04139                     ( 386)  178 41.4 0.00033


>>KIAA1645  ( 386 res)   fg04139                          (386 aa)
 initn:  82 init1:  82 opt: 178  Z-score: 167.4  bits: 41.4 E(): 0.00033
Smith-Waterman score: 178;  23.902% identity (54.634% similar) in 205 aa overlap (119-314:98-296)

       90       100       110       120       130          140     
KIAA10 LTSEYFQICKTVRHGFPHQPTALAFDPVQKILAIGTRTGAIRILG---RPGVDCYCQHES
                                     .:  :...: ..: .   : .:     : .
KIAA16 PPDPQFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGH-G
        70        80        90       100       110       120       

         150       160       170       180       190       200     
KIAA10 GAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYCHLPF----Q
       :  :  :: : .   :.: . :  : ::.: . : :.. :. .  : . .:.  .    :
KIAA16 GQCVTWLQTLPQGRQLLSQGRDLKLCLWDLAEGRSAVVDSVCL--ESVGFCRSSILAGGQ
        130       140       150       160         170       180    

             210       220       230       240       250       260 
KIAA10 SKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLI
        .:  .   ::. ..  .:    ..   .  ::   ..:      ..: ..  .   ::.
KIAA16 PRWTLAVPGRGSDEVQILEMPSKTSVCALKPKA---DAKLGMPMCLRLWQADCSSRPLLL
          190       200       210          220       230       240 

              270       280        290       300       310         
KIAA10 -GYENGTVVFWDLKSKRAELRVY-YDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSR
        :::.:.::.::.. ...  :.  ..: . ..:.  .  . . . .  .:..:.:     
KIAA16 AGYEDGSVVLWDVSEQKVCSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLDWQQA
             250       260       270       280       290       300 

     320       330       340       350       360       370         
KIAA10 PFQTTIPHGKSQREGRKSESCKPILKVEYKTCKNSEPFIIFSGGLSYDKACRRPSLTIMH
                                                                   
KIAA16 LQVRGTHELTNPGIAEVTIRPDRKILATAGWDHRIRVFHWRTMQPLAVLAFHSAAVQCVA
             310       320       330       340       350       360 




1221 residues in 1 query   sequences
1986284 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:05:26 2008 done: Thu Dec 18 15:05:27 2008
 Total Scan time:  0.740 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]