# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk09652.fasta.huge -Q ../query/KIAA1001.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1001, 551 aa vs ./tmplib.24314 library 1986954 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.3222+/-0.00491; mu= 18.6505+/- 0.336 mean_var=87.7182+/-20.453, 0's: 0 Z-trim: 3 B-trim: 7 in 1/39 Lambda= 0.136940 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1247 ( 885 res) pj01452 ( 885) 168 43.4 8.3e-05 KIAA1077 ( 818 res) hj06803 ( 818) 134 36.7 0.0084 >>KIAA1247 ( 885 res) pj01452 (885 aa) initn: 116 init1: 54 opt: 168 Z-score: 178.1 bits: 43.4 E(): 8.3e-05 Smith-Waterman score: 184; 22.362% identity (49.497% similar) in 398 aa overlap (58-434:55-415) 30 40 50 60 70 80 KIAA10 GWLFLKVLLAGVSFSGFLYPLVDFCISGKTRGQKPNFVIILADDMGWGDLGANWAETKDT :. .::....:.::. .::. . .: KIAA12 LLSATVFSLLGGSSAFLSHHRLKGRFQRDRRNIRPNIILVLTDDQDV-ELGSMQVMNKTR 30 40 50 60 70 80 90 100 110 120 130 140 KIAA10 ANLDKMASEGMRFVDFHAAASTCSPSRASLLTGR-LGLRNGVTRNFAVTSVGGLPLNET- ... : .:.. ... : :::.:.:::. . .: : : .: . .:. KIAA12 RIMEQ---GGTHFINAFVTTPMCCPSRSSILTGKYVHNHNTYTNNENCSSPSWQAQHESR 90 100 110 120 130 140 150 160 170 180 190 200 KIAA10 TLAEVLQQAGYVTGIIGKWHLGHHGSYHPNFRGFDYYFGIPYSHDMGCTDTPGYNHPPCP :.: :...:: :...::. ..::: : :. . :. .. ::. : KIAA12 TFAVYLNSTGYRTAFFGKYLNEYNGSYVPP--GWKEWVGL-------LKNSRFYNYTLCR 150 160 170 180 190 210 220 230 240 250 KIAA10 AC---PQGDGPSRNLQRDCYTDVALPLYENLNIV--EQPVNL--SSLA----QKYAEKAT .:. :.. : :. .. .... . . ..:: . : : . : . . KIAA12 NGVKEKHGSDYSKDYLTDLITNDSVSFFRTSKKMYPHRPVLMVISHAAPHGPEDSAPQYS 200 210 220 230 240 250 260 270 280 290 300 310 KIAA10 QFIQRASTSGRPFLLYVALAHMHVPLPVTQLPAAP----RGRSLYGAGLWEMDSLVGQIK ... :: : :. : . : : : : : . :. ... KIAA12 RLFPNASQHITPSYNYAPNPDKHWIMRYTG-PMKPIHMEFTNMLQRKRLQTLMSVDDSME 260 270 280 290 300 310 320 330 340 350 360 KIAA10 DKVDHTVK----ENTFLWFTGDNGPWAQKCELAGSVGPFTGFWQTRQGGSPAKQTTWEGG . :. .::.. .:.:.: .: : : .:. .: KIAA12 TIYNMLVETGELDNTYIVYTADHG---------YHIGQF--------GLVKGKSMPYEFD 320 330 340 350 370 380 390 400 410 420 KIAA10 HRVPALAYWPGRVPVNVTSTALLSVLDIFPTVVALAQASLPQGRRFDGVDVSEVLFGRSQ ::: . :. : .. . .. .:. ::.. .: ..: .:: .. . :. . KIAA12 IRVPFYVRGPN-VEAGCLNPHIVLNIDLAPTILDIAGLDIPAD--MDGKSILK-LLDTER 360 370 380 390 400 430 440 450 460 470 480 KIAA10 PGHRVLFHPNSGAAGEFGALQTVRLERYKAFYITGGARACDGSTGPELQHKFPLIFNLED : .: :: KIAA12 PVNR--FHLKKKMRVWRDSFLVERGKLLHKRDNDKVDAQEENFLPKYQRVKDLCQRAEYQ 410 420 430 440 450 460 >>KIAA1077 ( 818 res) hj06803 (818 aa) initn: 119 init1: 54 opt: 134 Z-score: 142.2 bits: 36.7 E(): 0.0084 Smith-Waterman score: 176; 24.324% identity (48.378% similar) in 370 aa overlap (93-439:17-351) 70 80 90 100 110 120 KIAA10 NFVIILADDMGWGDLGANWAETKDTANLDKMASEGMRFVDFHAAASTCSPSRASLLTGRL : : :.. ... : :::.:.:::. KIAA10 DVELGSLQVMNKTRKIMEHGGATFINAFVTTPMCCPSRSSMLTGKY 10 20 30 40 130 140 150 160 170 180 KIAA10 GLRNGV-TRNFAVTSVGGLPLNET-TLAEVLQQAGYVTGIIGKWHLGHHGSYHPNFRGFD ..: : : .: . ..: :.: :...:: :...::. ..::: : :. KIAA10 VHNHNVYTNNENCSSPSWQAMHEPRTFAVYLNNTGYRTAFFGKYLNEYNGSYIPP--GWR 50 60 70 80 90 100 190 200 210 220 230 KIAA10 YYFGIPYSHDMGCTDTPGYNHPPCPACPQGDGPSRNLQRDCYTDVALPLYENLNIVE--- ..:. .. ::. : . . . . .: .:: : :..: . KIAA10 EWLGL-------IKNSRFYNYTVCRNGIK-EKHGFDYAKDYFTD--LITNESINYFKMSK 110 120 130 140 150 240 250 260 270 280 KIAA10 -----QPVNL--SSLAQKYAE-KATQFIQ---RASTSGRPFLLYVALAHMHVPLPVT--Q .:: . : : . : .: :: . :: : :. : . : . KIAA10 RMYPHRPVMMVISHAAPHGPEDSAPQFSKLYPNASQHITPSYNYAPNMDKHWIMQYTGPM 160 170 180 190 200 210 290 300 310 320 330 KIAA10 LPAAPRGRSLYG----AGLWEMDSLVGQIKDKVDHTVK-ENTFLWFTGDNGPWAQKCELA :: . .. : .:. : .. . . .: . :::.. .:.:.: KIAA10 LPIHMEFTNILQRKRLQTLMSVDDSVERLYNMLVETGELENTYIIYTADHGY-------- 220 230 240 250 260 340 350 360 370 380 390 KIAA10 GSVGPFTGFWQTRQGGSPAKQTTWEGGHRVPALAYWPGRVPVNVTSTALLSVLDIFPTVV .: : : .:. .. ::: . :. : ... .:.. :. ::.. KIAA10 -HIGQF--------GLVKGKSMPYDFDIRVPFFIRGPSVEPGSIVPQIVLNI-DLAPTIL 270 280 290 300 310 400 410 420 430 440 450 KIAA10 ALAQASLPQGRRFDGVDVSEVLFGRSQPGHRVLFHPNSGAAGEFGALQTVRLERYKAFYI .: . : :: .: . :. .::.: :. :. : KIAA10 DIAGLDTPPD--VDGKSVLK-LLDPEKPGNR--FRTNKKAKIWRDTFLVERGKFLRKKEE 320 330 340 350 360 370 460 470 480 490 500 510 KIAA10 TGGARACDGSTGPELQHKFPLIFNLEDDTAEAVPLERGGAEYQAVLPEVRKVLADVLQDI KIAA10 SSKNIQQSNHLPKYERVKELCQQARYQTACEQPGQKWQCIEDTSGKLRIHKCKGPSDLLT 380 390 400 410 420 430 551 residues in 1 query sequences 1986954 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:05:15 2008 done: Thu Dec 18 15:05:15 2008 Total Scan time: 0.480 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]