hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-19080338/chunk_1/iprscan-20080502-19080338.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1000 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00242 1206.2 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00242 1/1 107 801 .. 1 771 [] 1206.2 0 Alignments of top-scoring domains: SM00242: domain 1 of 1, from 107 to 801: score 1206.2, E = 0 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav +npp+fe eDm++Lt+LnE++vlh+Lk RY + +IYTY+Gl++v + KIAA1000 107 MNPPEFEMIEDMAMLTHLNEASVLHTLKRRYGQWMIYTYSGLFCVTI 153 NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre NPYk l p+Y +ev+++Y+ Gk+r+E pPH+FA+A++A+++Ml++ KIAA1000 154 NPYKWL-PVYQKEVMAAYK------GKRRSEAPPHIFAVANNAFQDMLHN 196 keNQsIiISGESGAGKTEatKkimqYLAavsg......svesvedqiLes +eNQsI+++GESGAGKT+++K+i+qY+A +++ +++++ + +edqi+++ KIAA1000 197 RENQSILFTGESGAGKTVNSKHIIQYFATIAAmiesrkKQGALEDQIMQA 246 NPiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRV N iLEAFGNAKT+RN+NSSRFGKfi++hF++ G+++ +I YLLEKSRV KIAA1000 247 NTILEAFGNAKTLRNDNSSRFGKFIRMHFGARGMLSSVDIDIYLLEKSRV 296 VsQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpf ++Q+ gERNYHIFYQ+L+G + +++ l+L S++p+d+++ + g KIAA1000 297 IFQQAGERNYHIFYQILSG--QKELHDLLLV--SANPSDFHFCSCG---- 338 ankryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilA +tv++ DDaee + t++Am++lGf +E+ ++++ KIAA1000 339 --------AVTVESLDDAEELLA----TEQAMDILGFLPDEKYGCYKLTG 376 AILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLeka AI+H GN++F+++++ +++ ++ +++e ++kaA L+g++++eL k KIAA1000 377 AIMHFGNMKFKQKPR--EEQLEA----DGTENADKAAFLMGINSSELVKC 420 LtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINk L +++ik+g+e ++t+ ++ eq++ a++AL+K +Y+R+F+WLV rIN+ KIAA1000 421 LIHPRIKVGNE---YVTRGQTIEQVTCAVGALSKSMYERMFKWLVARINR 467 sl.....sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFK +l+ + +++ fIG+LDI GFEi e NS+EQ+CIN++NEKLQQfFn ++F+ KIAA1000 468 ALdaklsRQFFIGILDITGFEILEYNSLEQLCINFTNEKLQQFFNWYMFV 517 lEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClf lEQEEY++E IeW I F+l D+Q+ciDLIEk+ +GIls+L+EeC+f KIAA1000 518 LEQEEYKKESIEWVSIGFGL-DLQACIDLIEKP----MGILSILEEECMF 562 HAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrta Pk+TD tF KL ++h++k+ h++kp kp+k++ +++ KIAA1000 563 ---PKATDLTFKTKL----FDNHFGKSVHLQKP-------KPDKKKFEAH 598 FiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeead F + HYAG V Yn+ G+LeKNkD L+e +++++q+S+n+l+asLF+ +++ KIAA1000 599 FELVHYAGVVPYNISGWLEKNKDLLNETVVAVFQKSSNRLLASLFENYMS 648 qsssaakekss.ggagksrkagrrepskgtisskkrppTvGsqFk.sLne ++ s+ ++ k+rk+ +++++Tv+s++k+ Ln+ KIAA1000 649 TD-------SAiPFGEKKRKK------------GASFQTVASLHKeNLNK 679 LmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRra Lm++L st PHF+RCI PN +K pg+ d+ lVl+QLr++GvLE+ RI+r+ KIAA1000 680 LMTNLKSTAPHFVRCINPNVNKIPGILDPYLVLQQLRCNGVLEGTRICRE 729 GFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslg GFP+Rl +++F qRY +L p t p + f + +ka+e lL sl+ KIAA1000 730 GFPNRLQYADFKQRYCILNPRTFPKSK-------FVSSRKAAEELLGSLE 772 lgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-* +d+ +y++G TKvF++ +g l+ LE +R+e KIAA1000 773 -------IDHTQYRFGITKVFFK-AGFLGQLEAIRDE 801 //