hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19043862/chunk_1/iprscan-20080502-19043862.nocrc
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Query sequence: KIAA0998
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03133.5.ls Tubulin-tyrosine ligase family                 414.4   1.5e-121   1
PF03133.5.fs Tubulin-tyrosine ligase family                 412.5   5.6e-121   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03133.5.fs   1/1      56   351 ..     1   330 []   412.5 5.6e-121
PF03133.5.ls   1/1      56   351 ..     1   330 []   414.4 1.5e-121

Alignments of top-scoring domains:
PF03133.5.fs: domain 1 of 1, from 56 to 351: score 412.5, E = 5.6e-121
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      ++l e      q++NhFP+sye+trKD+l+kni r+q+++g+k   f
    KIAA0998    56    RTLSE-----AQKVNHFPRSYELTRKDRLYKNIIRMQHTHGFK--VF 95   

                   dflprtfilptdlrefvdyfekreregqdntWIvKPsasaRGrGIritnk
                    +lp+tf+lp++++ef + + k+++      WIvKP as+RGrG++++n+
    KIAA0998    96 HILPQTFLLPAEYAEFCNSYSKDRG-----PWIVKPVASSRGRGVYLINN 140  

                   lsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDvgkrKFDlR
                   ++qi+                +++ +V++YI +PLLid       KFD R
    KIAA0998   141 PNQIS---------------LEENILVSRYINNPLLIDD-----FKFDVR 170  

                   lYVLvtsvdPLriYvYregllRFAsvkYsp.lsdlddvemHLTNysiqkk
                   lYVLvts+dPL+iY+Y+egl+RFA+v Y+ + +++ + +mHLTNys++kk
    KIAA0998   171 LYVLVTSYDPLVIYLYEEGLARFATVRYDQgAKNIRNQFMHLTNYSVNKK 220  

                   ssnYsrlnedynepvghkwslqnlwlyleemgidkeeiwlqiesiiikti
                   s +Y+++ + + e+ g+kws ++  +yl+++g d+ ++++ +e++iikti
    KIAA0998   221 SGDYVSCDDPEVEDYGNKWSMSAMLRYLKQEGRDTTALMAHVEDLIIKTI 270  

                   laae..iveasrlnvaplyncFELyGfDimlkwdDDenlkPwLLEVNasP
                   ++ae  i++a+  +v  + +cFELyGfD+++    D++lkPwLLEVN+sP
    KIAA0998   271 ISAElaIATACKTFVPHRSSCFELYGFDVLI----DSTLKPWLLEVNLSP 316  

                   slhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   sl+++ +ld ++ka +i+d +  ++ +v  d++++    
    KIAA0998   317 SLACDAPLDLKIKASMISDMFT-VVGFVCQDPAQRA    351  

PF03133.5.ls: domain 1 of 1, from 56 to 351: score 414.4, E = 1.5e-121
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      ++l e      q++NhFP+sye+trKD+l+kni r+q+++g+k   f
    KIAA0998    56    RTLSE-----AQKVNHFPRSYELTRKDRLYKNIIRMQHTHGFK--VF 95   

                   dflprtfilptdlrefvdyfekreregqdntWIvKPsasaRGrGIritnk
                    +lp+tf+lp++++ef + + k+++      WIvKP as+RGrG++++n+
    KIAA0998    96 HILPQTFLLPAEYAEFCNSYSKDRG-----PWIVKPVASSRGRGVYLINN 140  

                   lsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDvgkrKFDlR
                   ++qi+                +++ +V++YI +PLLid       KFD R
    KIAA0998   141 PNQIS---------------LEENILVSRYINNPLLIDD-----FKFDVR 170  

                   lYVLvtsvdPLriYvYregllRFAsvkYsp.lsdlddvemHLTNysiqkk
                   lYVLvts+dPL+iY+Y+egl+RFA+v Y+ + +++ + +mHLTNys++kk
    KIAA0998   171 LYVLVTSYDPLVIYLYEEGLARFATVRYDQgAKNIRNQFMHLTNYSVNKK 220  

                   ssnYsrlnedynepvghkwslqnlwlyleemgidkeeiwlqiesiiikti
                   s +Y+++ + + e+ g+kws ++  +yl+++g d+ ++++ +e++iikti
    KIAA0998   221 SGDYVSCDDPEVEDYGNKWSMSAMLRYLKQEGRDTTALMAHVEDLIIKTI 270  

                   laae..iveasrlnvaplyncFELyGfDimlkwdDDenlkPwLLEVNasP
                   ++ae  i++a+  +v  + +cFELyGfD+++    D++lkPwLLEVN+sP
    KIAA0998   271 ISAElaIATACKTFVPHRSSCFELYGFDVLI----DSTLKPWLLEVNLSP 316  

                   slhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   sl+++ +ld ++ka +i+d +  ++ +v  d++++    
    KIAA0998   317 SLACDAPLDLKIKASMISDMFT-VVGFVCQDPAQRA    351  

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