# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk08691.fasta.huge -Q ../query/KIAA0998.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0998, 1226 aa vs ./tmplib.23663 library 1986279 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.9699+/-0.00786; mu= -1.8306+/- 0.531 mean_var=256.5317+/-63.105, 0's: 0 Z-trim: 2 B-trim: 31 in 1/39 Lambda= 0.080076 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0173 ( 1203 res) ha02346 (1203) 1043 134.7 8.6e-32 >>KIAA0173 ( 1203 res) ha02346 (1203 aa) initn: 406 init1: 406 opt: 1043 Z-score: 662.6 bits: 134.7 E(): 8.6e-32 Smith-Waterman score: 1043; 37.961% identity (69.197% similar) in 461 aa overlap (6-460:607-1058) 10 20 30 KIAA09 IRVIGERYHLSYKIVRTDSRLVRSILTAHGFHEVH .: : .:. . .:.. . : .. KIAA01 PALIYSLFPNVPPTIYFGTRDERVEKLPWEQRKLLRWKMSTVTPNIVKQTIGRSHF-KIS 580 590 600 610 620 630 40 50 60 70 80 90 KIAA09 PSSTDYNLMWTGSHLKPFLLRTLSEAQKVNHFPRSYELTRKDRLYKNIIRMQHTHGFKVF . :. : : :.: .:.. : ::.:::: :... :::::..:. ::: : : : KIAA01 KRNDDWLGCW-GHHMKSPSFRSIREHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKEF 640 650 660 670 680 690 100 110 120 130 140 150 KIAA09 HILPQTFLLPAEYAEFCNSY-SKDRGPWIVKPVASSRGRGVYLINNPNQISLEENILVSR ..::.:.:: . . ... :..: ::::: ::.:: :. .:.. .:. .. .::.: KIAA01 SFFPQSFILPQDAKLLRKAWESSSRQKWIVKPPASARGIGIQVIHKWSQLPKRRPLLVQR 700 710 720 730 740 750 160 170 180 190 200 210 KIAA09 YINNPLLIDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQGAKNIRNQFMHLTN :...: ::. :::.:.:: ::::::: :::. .::.:::. .:. . :.. :.:::::: KIAA01 YLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLGNKFMHLTN 760 770 780 790 800 810 220 230 240 250 260 270 KIAA09 YSVNKKSGDYVSCDDPEVEDYGNKWSMSAMLRYLKQEGRDTTALMAHVEDLIIKTIISAE ::::::...: . : :. :.::...:. ::.:.: .. :. ...:...:::::.: KIAA01 YSVNKKNAEYQANAD-EMACQGHKWALKALWNYLSQKGVNSDAIWEKIKDVVVKTIISSE 820 830 840 850 860 870 280 290 300 310 320 330 KIAA09 LAIATACKTFVPHRSSCFELYGFDVLIDSTLKPWLLEVNLSPSLACDAPLDLKIKASMIS ... : .: . :: ::.:::...: .::::.::::.:::: ..:::..::..:: KIAA01 PYVTSLLKMYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHSSSPLDISIKGQMIR 880 890 900 910 920 930 340 350 360 370 380 390 KIAA09 DMFTVVGFVCQDPAQRASTRPIYPTFESSRRN--PFQKPQRCR--PLSASDAEMKNLVGS :.....::: . . :. :. :: . : . ..:: : .. .::. KIAA01 DLLNLAGFVLPNAEDIISS----PSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMKKAYYL 940 950 960 970 980 400 410 420 430 440 KIAA09 AREKGPGKLGGSVLG-LSMEEIKVLRRVKEENDRRGGFIRIFPTSETWEIYGSYLEHKTS ... . .::: :. .....: ....: .::: : ::::. . . : ..:. KIAA01 TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPSHISSR-YLRFFEQPRY 990 1000 1010 1020 1030 1040 450 460 470 480 490 500 KIAA09 MNYMLATRLFQDRMTADGAPELKIESLNSKAKLHAALYERKLLSLEVRKRRRRSSRLRAM .: .:.:. : KIAA01 FN-ILTTQWEQKYHGNKLKGVDLLRSWCYKGFHMGVVSDSAPVWSLPTSLLTISKDDVIL 1050 1060 1070 1080 1090 1100 1226 residues in 1 query sequences 1986279 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:24:41 2008 done: Thu Dec 18 15:24:41 2008 Total Scan time: 0.740 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]